Kowallis, Kimberly
(2020)
Regulatory Mechanisms of a Bacterial Multi-Kinase Network.
Doctoral Dissertation, University of Pittsburgh.
(Unpublished)
Abstract
Cells sense and respond to their environment through signaling pathways which often require processing several signals prior to implementing a biological response. Bacterial signaling pathways are responsible for processes such as virulence, biofilm formation, survival, and symbiosis that are of research interest for medical, environmental, and industrial advancements. Emerging discoveries suggest that the systems that control these responses are more complex and intertwined than the previously understood two-component systems. Proteins such as scaffolds and pseudokinases regulate the localization, activity, and timing of the phosphotransfer reactions that dictate cellular decisions. This dissertation describes regulatory mechanisms of a multi-kinase network that controls asymmetric division in the model bacterium C. crescentus.
It has been proposed that the novel pseudokinase DivL reverses signal flow by exploiting conserved kinase conformational changes and protein-protein interactions. Chapter 2 describes the development and characterization of a series of DivL-based modulators to synthetically stimulate reverse signaling of the network in vivo. I propose that synthetic stimulation and sensor disruption provide strategies to define signaling circuit organization principles for the rational design and validation of synthetic pathways.
In Chapter 3, I further dissect the roles of each DivL domain on subcellular localization and downstream activity. While not catalytically active, pseudokinases have been repurposed to serve functions including complex signal recognition, integration, competition, and intermolecular allostery. I provide a refined model detailing how DivL plays each of these parts within its broader network.
The work in Chapter 3 also revealed multiple scaffolding interactions that orchestrate the multi-kinase network in time and space. In Chapter 4 I identify factors that lead to the accumulation of two biochemically distinct signaling hubs at opposite cell poles to provide the foundation for asymmetry. I also provide evidence that a scaffold not only recruits a key signaling protein to the correct location but mediates its switch between kinase and phosphatase activities that drives the cell cycle.
In each chapter, I discuss questions that remain and suggest future directions for study. Overall, this dissertation contributes strategies that can be used to interrogate other relevant multi-kinase networks in bacteria.
Share
| Citation/Export: |
|
| Social Networking: |
|
Details
| Item Type: |
University of Pittsburgh ETD
|
| Status: |
Unpublished |
| Creators/Authors: |
|
| ETD Committee: |
|
| Date: |
16 September 2020 |
| Date Type: |
Publication |
| Defense Date: |
9 July 2020 |
| Approval Date: |
16 September 2020 |
| Submission Date: |
12 May 2020 |
| Access Restriction: |
No restriction; Release the ETD for access worldwide immediately. |
| Number of Pages: |
210 |
| Institution: |
University of Pittsburgh |
| Schools and Programs: |
Dietrich School of Arts and Sciences > Chemistry |
| Degree: |
PhD - Doctor of Philosophy |
| Thesis Type: |
Doctoral Dissertation |
| Refereed: |
Yes |
| Uncontrolled Keywords: |
bacterial signaling
Caulobacter crescentus
histidine kinase
protein engineering
scaffold |
| Date Deposited: |
16 Sep 2020 14:18 |
| Last Modified: |
16 Sep 2020 14:18 |
| URI: |
http://d-scholarship.pitt.edu/id/eprint/39009 |
Metrics
Monthly Views for the past 3 years
Plum Analytics
Actions (login required)
 |
View Item |
![[feed]](/images/feed-icon-32x32.png){kind=icon}