Chapman-McQuiston, Emily Louise
(2008)
The Effect of Noisy Protein Expression on E. coli/Phage Dynamics.
Doctoral Dissertation, University of Pittsburgh.
(Unpublished)
Abstract
It has long been suspected that population heterogeneity, either at a genetic level or at a protein level, can improve the fitness of an organism under a variety of environmental stresses. However, quantitative measurements to substantiate such a hypothesis turn out to be rather difficult and have rarely been performed. We examine the response of Escherichia coli (E. coli) to infection by viruses known as phage. In order to inject its DNA into a bacterium, the phage must first bind to a specific receptor protein and consequently the number of receptors per bacterium is related to the bacterial susceptibility to infection. Like many proteins in a bacterial population, the number of expressed receptor proteins in an individual cell is not deterministic but stochastic. In this project, experiments and model calculations are used to study how the noisy expression of phage receptors in a bacterial population changes the short-time population dynamics of an isolated and well-mixed E. coli/phage system. We find that when phage are present in the system, the selective killing of bacteria expressing high numbers of phage receptors creates a phenotype selection and the bacterial population can no longer be considered as having a homogeneous susceptibility to the phage pressure. It is shown that a heterogeneous bacterial population is significantly more fit compared to a homogeneous population when confronting a phage attack. We find that a small percentage of cells which are expressing few phage receptors become important because these bacteria persist despite the presence of phage. In view of their important roles in environmental adaptation, in various diseases and potentially in evolution, a fundamental understanding of this minority of cells remains a significant challenge.
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Details
| Item Type: |
University of Pittsburgh ETD
|
| Status: |
Unpublished |
| Creators/Authors: |
| Creators | Email | Pitt Username | ORCID  |
|---|
| Chapman-McQuiston, Emily Louise | elc6@pitt.edu | ELC6 | |
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| ETD Committee: |
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| Date: |
23 January 2008 |
| Date Type: |
Completion |
| Defense Date: |
13 November 2007 |
| Approval Date: |
23 January 2008 |
| Submission Date: |
15 October 2007 |
| Access Restriction: |
No restriction; Release the ETD for access worldwide immediately. |
| Institution: |
University of Pittsburgh |
| Schools and Programs: |
Dietrich School of Arts and Sciences > Physics |
| Degree: |
PhD - Doctor of Philosophy |
| Thesis Type: |
Doctoral Dissertation |
| Refereed: |
Yes |
| Uncontrolled Keywords: |
flow cytometry; stochastic protein expression; bacteria; phage |
| Other ID: |
http://etd.library.pitt.edu/ETD/available/etd-10152007-153219/, etd-10152007-153219 |
| Date Deposited: |
10 Nov 2011 20:03 |
| Last Modified: |
15 Nov 2016 13:50 |
| URI: |
http://d-scholarship.pitt.edu/id/eprint/9472 |
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