Items where Division is "School of Medicine > Computational and Systems Biology" and Year is 2014

Article

Baron, JL and Vikram, A and Duda, S and Stout, JE and Bibby, K (2014) Shift in the microbial ecology of a hospital hot water system following the introduction of an on-site monochloramine disinfection system. PLoS ONE, 9 (7).

Castro, JB and Quinn, SP and Ramanathan, A and Chennubhotla, CS (2014) Categorical, low-dimensional decomposition of human odor space with non-negative matrix factorization. Flavour, 3 (S1).

Cheng, MH and Bahar, I (2014) Complete Mapping of Substrate Translocation Highlights the Role of LeuT N-terminal Segment in Regulating Transport Cycle. PLoS Computational Biology, 10 (10). ISSN 1553-734X

Chikina, MD and Sealfon, SC (2014) Increasing consistency of disease biomarker prediction across datasets. PLoS ONE, 9 (4).

Das, A and Gur, M and Cheng, MH and Jo, S and Bahar, I and Roux, B (2014) Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model. PLoS Computational Biology, 10 (4). ISSN 1553-734X

Erwin, GD and Oksenberg, N and Truty, RM and Kostka, D and Murphy, KK and Ahituv, N and Pollard, KS and Capra, JA (2014) Integrating Diverse Datasets Improves Developmental Enhancer Prediction. PLoS Computational Biology, 10 (6). ISSN 1553-734X

Findlay, GD and Sitnik, JL and Wang, W and Aquadro, CF and Clark, NL and Wolfner, MF (2014) Evolutionary Rate Covariation Identifies New Members of a Protein Network Required for Drosophila melanogaster Female Post-Mating Responses. PLoS Genetics, 10 (1). ISSN 1553-7390

Gardner, CL and Hritz, J and Sun, C and Vanlandingham, DL and Song, TY and Ghedin, E and Higgs, S and Klimstra, WB and Ryman, KD (2014) Deliberate Attenuation of Chikungunya Virus by Adaptation to Heparan Sulfate-Dependent Infectivity: A Model for Rational Arboviral Vaccine Design. PLoS Neglected Tropical Diseases, 8 (2). ISSN 1935-2727

General, IJ and Liu, Y and Blackburn, ME and Mao, W and Gierasch, LM and Bahar, I (2014) ATPase Subdomain IA Is a Mediator of Interdomain Allostery in Hsp70 Molecular Chaperones. PLoS Computational Biology, 10 (5). ISSN 1553-734X

Gough, AH and Chen, N and Shun, TY and Lezon, TR and Boltz, RC and Reese, CE and Wagner, J and Vernetti, LA and Grandis, JR and Lee, AV and Stern, AM and Schurdak, ME and Taylor, DL (2014) Identifying and quantifying heterogeneity in high content analysis: Application of heterogeneity indices to drug discovery. PLoS ONE, 9 (7).

Hogg, JS and Harris, LA and Stover, LJ and Nair, NS and Faeder, JR (2014) Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems. PLoS Computational Biology, 10 (4). ISSN 1553-734X

Jordan, R and Visweswaran, S and Gopalakrishnan, V (2014) Semi-automated literature mining to identify putative biomarkers of disease from multiple biofluids. Journal of Clinical Bioinformatics, 4 (1).

Joy, ME and Vollmer, LL and Hulkower, K and Stern, AM and Peterson, CK and Boltz, RC and Roy, P and Vogt, A (2014) A high-content, multiplexed screen in human breast cancer cells identifies profilin-1 inducers with anti-migratory activities. PLoS ONE, 9 (2).

LaRusch, J and Jung, J and General, IJ and Lewis, MD and Park, HW and Brand, RE and Gelrud, A and Anderson, MA and Banks, PA and Conwell, D and Lawrence, C and Romagnuolo, J and Baillie, J and Alkaade, S and Cote, G and Gardner, TB and Amann, ST and Slivka, A and Sandhu, B and Aloe, A and Kienholz, ML and Yadav, D and Barmada, MM and Bahar, I and Lee, MG and Whitcomb, DC (2014) Mechanisms of CFTR Functional Variants That Impair Regulated Bicarbonate Permeation and Increase Risk for Pancreatitis but Not for Cystic Fibrosis. PLoS Genetics, 10 (7). ISSN 1553-7390

Liao, SG and Lin, Y and Kang, DD and Chandra, D and Bon, J and Kaminski, N and Sciurba, FC and Tseng, GC (2014) Missing value imputation in high-dimensional phenomic data: Imputable or not, and how? BMC Bioinformatics, 15 (1).

Luciani, T and Wenskovitch, J and Chen, K and Koes, D and Travers, T and Elisabeta Marai, G (2014) FixingTIM: Interactive exploration of sequence and structural data to identify functional mutations in protein families. BMC Proceedings, 8.

Mohan, AM and Bibby, KJ and Lipus, D and Hammack, RW and Gregory, KB (2014) The functional potential of microbial communities in hydraulic fracturing source water and produced water from natural gas extraction characterized by metagenomic sequencing. PLoS ONE, 9 (10).

Ouyang, Q and Wang, L and Mu, Y and Xie, XQ (2014) Modeling skin sensitization potential of mechanistically hard-to-be-classified aniline and phenol compounds with quantum mechanistic properties. BMC Pharmacology and Toxicology, 15 (1). ISSN 2050-6511

Von Dassow, M and Miller, CJ and Davidson, LA (2014) Biomechanics and the thermotolerance of development. PLoS ONE, 9 (4).

Wenskovitch, JE and Harris, LA and Tapia, JJ and Faeder, JR and Marai, GE (2014) MOSBIE: A tool for comparison and analysis of rule-based biochemical models. BMC Bioinformatics, 15 (1).

Xie, XQ and Wang, L and Liu, H and Ouyang, Q and Fang, C and Su, W (2014) Chemogenomics knowledgebased polypharmacology analyses of drug abuse related G-protein coupled receptors and their ligands. Frontiers in Pharmacology, 5 FEB.

University of Pittsburgh ETD

Azhar, Nabil (2014) Computational Modeling of Inflammatory Mediators in Acute Illness: From Networks to Mechanisms. Doctoral Dissertation, University of Pittsburgh. (Unpublished)

Lin, Yuefeng (2014) Towards the Construction of a Transcriptional Landscape of the Human Genome: Data Analysis and Data Compression. Master's Thesis, University of Pittsburgh. (Unpublished)

Mowrey, David (2014) Allosteric Modulation of Cys-loop Receptors. Doctoral Dissertation, University of Pittsburgh. (Unpublished)

Quinn, Shannon (2014) Distributed Spectral Graph Methods for Analyzing Large-Scale Unstructured Biomedical Data. Doctoral Dissertation, University of Pittsburgh. (Unpublished)

Travers, Timothy Niño S. (2014) Structural modeling of regulation in α-actinin/F-actin interactions. Doctoral Dissertation, University of Pittsburgh. (Unpublished)

Conference or Workshop Item

Yuan, Chenhui and Koes, David (2014) Computing free energies with PyBrella. In: 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB) 2015, 11 April 2015 - 15 April 2015, Warsaw, Poland.