Browse by Publication

Sedgewick, AJ and Shi, I and Donovan, RM and Benos, PV (2016) Learning mixed graphical models with separate sparsity parameters and stability-based model selection. BMC Bioinformatics, 17 (5).

Zeng, Z and Jiang, X and Neapolitan, R (2016) Discovering causal interactions using Bayesian network scoring and information gain. BMC Bioinformatics, 17 (1).

Chang, LC and Li, B and Fang, Z and Vrieze, S and McGue, M and Iacono, WG and Tseng, GC and Chen, W (2016) A computational method for genotype calling in family-based sequencing data. BMC Bioinformatics, 17 (1).

Tseytlin, E and Mitchell, K and Legowski, E and Corrigan, J and Chavan, G and Jacobson, RS (2016) NOBLE - Flexible concept recognition for large-scale biomedical natural language processing. BMC Bioinformatics, 17 (1).

Chen, L and Cai, C and Chen, V and Lu, X (2016) Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model. BMC Bioinformatics, 17 (1).

Cai, B and Jiang, X (2016) Computational methods for ubiquitination site prediction using physicochemical properties of protein sequences. BMC Bioinformatics, 17 (1).

Baron, RV and Conley, YP and Gorin, MB and Weeks, DE (2015) dbVOR: A database system for importing pedigree, phenotype and genotype data and exporting selected subsets. BMC Bioinformatics, 16 (1).

Hussain, F and Langmead, CJ and Mi, Q and Dutta-Moscato, J and Vodovotz, Y and Jha, SK (2015) Automated parameter estimation for biological models using Bayesian statistical model checking. BMC Bioinformatics, 16 (17).

Ogoe, HA and Visweswaran, S and Lu, X and Gopalakrishnan, V (2015) Knowledge transfer via classification rules using functional mapping for integrative modeling of gene expression data. BMC Bioinformatics, 16 (1).

Liao, SG and Lin, Y and Kang, DD and Chandra, D and Bon, J and Kaminski, N and Sciurba, FC and Tseng, GC (2014) Missing value imputation in high-dimensional phenomic data: Imputable or not, and how? BMC Bioinformatics, 15 (1).

Wenskovitch, JE and Harris, LA and Tapia, JJ and Faeder, JR and Marai, GE (2014) MOSBIE: A tool for comparison and analysis of rule-based biochemical models. BMC Bioinformatics, 15 (1).

Coarfa, C and Pichot, CS and Jackson, A and Tandon, A and Amin, V and Raghuraman, S and Paithankar, S and Lee, AV and McGuire, SE and Milosavljevic, A (2014) Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools. BMC Bioinformatics, 15. 1 - 12.

Katz, JP and Pipas, JM (2014) SummonChimera infers integrated viral genomes with nucleotide precision from NGS data. BMC Bioinformatics, 15 (1).

Chang, LC and Lin, HM and Sibille, E and Tseng, GC (2013) Meta-analysis methods for combining multiple expression profiles: Comparisons, statistical characterization and an application guideline. BMC Bioinformatics, 14 (1).

Wang, X and Lin, Y and Song, C and Sibille, E and Tseng, GC (2012) Detecting disease-associated genes with confounding variable adjustment and the impact on genomic meta-analysis: With application to major depressive disorder. BMC Bioinformatics, 13 (1).

Cresawn, SG and Bogel, M and Day, N and Jacobs-Sera, D and Hendrix, RW and Hatfull, GF (2011) Phamerator: A bioinformatic tool for comparative bacteriophage genomics. BMC Bioinformatics, 12.

Lustgarten, JL and Visweswaran, S and Gopalakrishnan, V and Cooper, GF (2011) Application of an efficient Bayesian discretization method to biomedical data. BMC Bioinformatics, 12.

Day, RS and McDade, KK and Chandran, UR and Lisovich, A and Conrads, TP and Hood, BL and Kolli, VSK and Kirchner, D and Litzi, T and Maxwell, GL (2011) Identifier mapping performance for integrating transcriptomics and proteomics experimental results. BMC Bioinformatics, 12.

Jiang, X and Neapolitan, RE and Barmada, MM and Visweswaran, S (2011) Learning genetic epistasis using Bayesian network scoring criteria. BMC Bioinformatics, 12.

Osmanbeyoglu, HU and Ganapathiraju, MK (2011) N-gram analysis of 970 microbial organisms reveals presence of biological language models. BMC Bioinformatics, 12.

Achuthan, Srisairam and Chung, Bong and Ghosh, Preetam and Rangachari, Vijayaraghavan and Vaidya, Ashwin (2011) A modified Stokes-Einstein equation for Aβ aggregation. BMC Bioinformatics, 12 (Suppl ). S13 - S13. ISSN 1471-2105

Gong, H and Zuliani, P and Komuravelli, A and Faeder, JR and Clarke, EM (2010) Analysis and verification of the HMGB1 signaling pathway. BMC Bioinformatics, 11 (SUPPL.).