Browse by Depositor

Bernard, ME and Kim, H and Berhane, H and Epperly, MW and Franicola, D and Zhang, X and Houghton, F and Shields, D and Wang, H and Bakkenist, CJ and Frantz, MC and Forbeck, EM and Goff, JP and Wipf, P and Greenberger, JS (2011) GS-nitroxide (JP4-039)-mediated radioprotection of human fanconi anemia cell lines. Radiation Research, 176 (5). 603 - 612. ISSN 0033-7587

Huryn, DM and Brodsky, JL and Brummond, KM and Chambers, PG and Eyer, B and Ireland, AW and Kawasumi, M and LaPorte, MG and Lloyd, K and Manteau, B and Nghiem, P and Quade, B and Seguin, SP and Wipf, P (2011) Chemical methodology as a source of small-molecule checkpoint inhibitors and heat shock protein 70 (Hsp70) modulators. Proceedings of the National Academy of Sciences of the United States of America, 108 (17). 6757 - 6762. ISSN 0027-8424

Belanger, AE and Porter, JC and Hatfull, GF (2000) Genetic analysis of peptidoglycan biosynthesis in mycobacteria: Characterization of a ddlA mutant of Mycobacterium smegmatis. Journal of Bacteriology, 182 (23). 6854 - 6856. ISSN 0021-9193

Cresawn, SG and Bogel, M and Day, N and Jacobs-Sera, D and Hendrix, RW and Hatfull, GF (2011) Phamerator: A bioinformatic tool for comparative bacteriophage genomics. BMC Bioinformatics, 12.

Banaiee, N and Bobadilla-del-Valle, M and Bardarov S., J and Riska, PF and Small, PM and Ponce-de-Leon, A and Jacobs, J and Hatfull, GF and Sifuentes-Osornio, J (2001) Luciferase reporter mycobacteriophages for detection, identification, and antibiotic susceptibility testing of mycobacterium tuberculosis in Mexico. Journal of Clinical Microbiology, 39 (11). 3883 - 3888. ISSN 0095-1137

Alibaud, L and Alahari, A and Trivelli, X and Ojha, AK and Hatfull, GF and Guerardel, Y and Kremer, L (2010) Temperature-dependent regulation of mycolic acid cyclopropanation in saprophytic mycobacteria: Role of the Mycobacterium smegmatis 1351 gene (MSMEG-1351) in cis-cyclopropanation of α-mycolates. Journal of Biological Chemistry, 285 (28). 21698 - 21707. ISSN 0021-9258

Bibb, Lori A and Hatfull, Graham F (2002) Integration and Excision of the Mycobacterium Tuberculosis Prophage-Like Element, PhiRv1. Molecular microbiology, 45 (6). 1515 - 1526. ISSN 0950-382X

Casjens, Sherwood R and Gilcrease, Eddie B and Huang, Wai Mun and Bunny, Kim L and Pedulla, Marisa L and Ford, Michael E and Houtz, Jennifer M and Hatfull, Graham F and Hendrix, Roger W (2004) The PKO2 Linear Plasmid Prophage of Klebsiella Oxytoca. Journal of bacteriology, 186 (6). 1818 - 1832. ISSN 0021-9193

Lawrence, Jeffrey G and Hatfull, Graham F and Hendrix, Roger W (2002) Imbroglios of Viral Taxonomy: Genetic Exchange and Failings of Phenetic Approaches. Journal of bacteriology, 184 (17). 4891 - 4905. ISSN 0021-9193

Casjens, SR and Gilcrease, EB and Winn-Stapley, DA and Schicklmaier, P and Schmieger, H and Pedulla, ML and Ford, ME and Houtz, JM and Hatfull, GF and Hendrix, RW (2005) The generalized transducing Salmonella bacteriophage ES18: Complete genome sequence and DNA packaging strategy. Journal of Bacteriology, 187 (3). 1091 - 1104. ISSN 0021-9193

Dobbins, Aleisha T and George, Matthew and Basham, Daryl A and Ford, Michael E and Houtz, Jennifer M and Pedulla, Marisa L and Lawrence, Jeffrey G and Hatfull, Graham F and Hendrix, Roger W (2004) Complete Genomic Sequence of the Virulent Salmonella Bacteriophage SP6. Journal of bacteriology, 186 (7). 1933 - 1944. ISSN 0021-9193

Hatfull, GF (2012) Complete genome sequences of 138 mycobacteriophages. Journal of Virology, 86 (4). 2382 - 2384. ISSN 0022-538X

Marine, R and Polson, SW and Ravel, J and Hatfull, G and Russell, D and Sullivan, M and Syed, F and Dumas, M and Wommack, KE (2011) Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA. Applied and Environmental Microbiology, 77 (22). 8071 - 8079. ISSN 0099-2240

Jain, P and Hartman, TE and Eisenberg, N and O'Donnell, MR and Kriakov, J and Govender, K and Makume, M and Thaler, DS and Hatfull, GF and Sturm, AW and Larsen, MH and Moodley, P and Jacobs, WR (2012) φ ²GFP10, a high-intensity fluorophage, enables detection and rapid drug susceptibility testing of Mycobacterium tuberculosis directly from sputum samples. Journal of Clinical Microbiology, 50 (4). 1362 - 1369. ISSN 0095-1137

Lewis, JA and Hatfull, GF (2001) Control of directionality in integrase-mediated recombination: Examination of recombination directionality factors (RDFs) including Xis and Cox proteins. Nucleic Acids Research, 29 (11). 2205 - 2216. ISSN 0305-1048

Mageeney, C and Pope, WH and Harrison, M and Moran, D and Cross, T and Jacobs-Sera, D and Hendrix, RW and Dunbar, D and Hatfull, GF (2012) Mycobacteriophage marvin: A new singleton phage with an unusual genome organization. Journal of Virology, 86 (9). 4762 - 4775. ISSN 0022-538X

Morris, P and Marinelli, LJ and Jacobs-Sera, D and Hendrix, RW and Hatfull, GF (2008) Genomic characterization of mycobacteriophage giles: Evidence for phage acquisition of host DNA by illegitimate recombination. Journal of Bacteriology, 190 (6). 2172 - 2182. ISSN 0021-9193

Ojha, A and Hatfull, GF (2007) The role of iron in Mycobacterium smegmatis biofilm formation: The exochelin siderophore is essential in limiting iron conditions for biofilm formation but not for planktonic growth. Molecular Microbiology, 66 (2). 468 - 483. ISSN 0950-382X

Kulka, K and Hatfull, G and Ojha, AK (2012) Growth of Mycobacterium tuberculosis biofilms. Journal of visualized experiments : JoVE (60).

Ojha, Anil K and Trivelli, Xavier and Guerardel, Yann and Kremer, Laurent and Hatfull, Graham F (2010) Enzymatic hydrolysis of trehalose dimycolate releases free mycolic acids during mycobacterial growth in biofilms. J Biol Chem, 285 (23). 17380 - 17389.

Pedulla, Marisa L and Ford, Michael E and Karthikeyan, Tharun and Houtz, Jennifer M and Hendrix, Roger W and Hatfull, Graham F and Poteete, Anthony R and Gilcrease, Eddie B and Winn-Stapley, Danella A and Casjens, Sherwood R (2003) Corrected Sequence of the Bacteriophage P22 Genome. Journal of bacteriology, 185 (4). 1475 - 1477. ISSN 0021-9193

Peteroy, M and Severin, A and Zhao, F and Rosner, D and Lopatin, U and Scherman, H and Belanger, A and Harvey, B and Hatfull, Graham F and Brennan, PJ and Connell, ND (2000) Characterization of a Mycobacterium Smegmatis Mutant that is Simultaneously Resistant to D-Cycloserine and Vancomycin. Antimicrobial agents and chemotherapy, 44 (6). 1701 - 1704. ISSN 0066-4804

Piuri, M and Hatfull, GF (2006) A peptidoglycan hydrolase motif within the mycobacteriophage TM4 tape measure protein promotes efficient infection of stationary phase cells. Molecular Microbiology, 62 (6). 1569 - 1585. ISSN 0950-382X

Rondón, L and Piuri, M and Jacobs, WR and De Waard, J and Hatfull, GF and Takiff, HE (2011) Evaluation of fluoromycobacteriophages for detecting drug resistance in Mycobacterium tuberculosis. Journal of Clinical Microbiology, 49 (5). 1838 - 1842. ISSN 0095-1137

Tikhonov, A and Coalson, RD and Asher, SA (2008) Light diffraction from colloidal crystals with low dielectric constant modulation: Simulations using single-scattering theory. Physical Review B - Condensed Matter and Materials Physics, 77 (23). ISSN 1098-0121

Belanger, AE and Hatfull, GF (1999) Exponential-phase glycogen recycling is essential for growth of Mycobacterium smegmatis. Journal of Bacteriology, 181 (21). 6670 - 6678. ISSN 0021-9193

Mong Hong Lee, and Hatfull, GF (1993) Mycobacteriophage L5 integrase-mediated site-specific integration in vitro. Journal of Bacteriology, 175 (21). 6836 - 6841. ISSN 0021-9193

Pedulla, ML and Hatfull, GF (1998) Characterization of the mIHF gene of Mycobacterium smegmatis. Journal of Bacteriology, 180 (20). 5473 - 5477. ISSN 0021-9193

Peña, CEA and Kahlenberg, JM and Hatfull, GF (1998) The role of supercoiling in mycobacteriophage L5 integrative recombination. Nucleic Acids Research, 26 (17). 4012 - 4018. ISSN 0305-1048

Peña, CEA and Stoner, JE and Hatfull, GF (1996) Positions of strand exchange in mycobacteriophage L5 integration and characterization of the attB site. Journal of Bacteriology, 178 (18). 5533 - 5536. ISSN 0021-9193

Peña, CEA and Kahlenberg, JM and Hatfull, GF (1999) Protein-DNA complexes in mycobacteriophage L5 integrative recombination. Journal of Bacteriology, 181 (2). 454 - 461. ISSN 0021-9193

Riska, PF and Su, Y and Bardarov, S and Freundlich, L and Sarkis, G and Hatfull, G and Carrière, C and Kumar, V and Chan, J and Jacobs, WR (1999) Rapid film-based determination of antibiotic susceptibilities of Mycobacterium tuberculosis strains by using a luciferase reporter phage and the Bronx Box. Journal of Clinical Microbiology, 37 (4). 1144 - 1149. ISSN 0095-1137

Pascopella, L and Collins, FM and Martin, JM and Mong Hong Lee, and Hatfull, GF and Stover, CK and Bloom, BR and Jacobs, WR (1994) Use of in vivo complementation in Mycobacterium tuberculosis to identify a genomic fragment associated with virulence. Infection and Immunity, 62 (4). 1313 - 1319. ISSN 0019-9567

Klann, AG and Belanger, AE and Abanes-de Mello, A and Lee, JY and Hatfull, GF (1998) Characterization of the dnaG locus in Mycobacterium smegmatis reveals linkage of DNA replication and cell division. Journal of Bacteriology, 180 (1). 65 - 72. ISSN 0021-9193

Liu, Z and Celotto, AM and Romero, G and Wipf, P and Palladino, MJ (2012) Genetically encoded redox sensor identifies the role of ROS in degenerative and mitochondrial disease pathogenesis. Neurobiology of Disease, 45 (1). 362 - 368. ISSN 0969-9961

Kim, H and Bernard, ME and Epperly, MW and Shen, H and Amoscato, A and Dixon, TM and Doemling, AS and Li, S and Gao, X and Wipf, P and Wang, H and Zhang, X and Kagan, VE and Greenberger, JS (2011) Amelioration of radiation esophagitis by orally administered p53/Mdm2/Mdm4 inhibitor (BEB55) or GS-nitroxide. In Vivo, 25 (6). 841 - 848. ISSN 0258-851X

Milner, E and McCalmont, W and Bhonsle, J and Caridha, D and Cobar, J and Gardner, S and Gerena, L and Goodine, D and Lanteri, C and Melendez, V and Roncal, N and Sousa, J and Wipf, P and Dow, GS (2010) Anti-malarial activity of a non-piperidine library of next-generation quinoline methanols. Malaria Journal, 9 (1).

Botha, M and Chiang, AN and Needham, PB and Stephens, LL and Hoppe, HC and Külzer, S and Przyborski, JM and Lingelbach, K and Wipf, P and Brodsky, JL and Shonhai, A and Blatch, GL (2011) Plasmodium falciparum encodes a single cytosolic type i Hsp40 that functionally interacts with Hsp70 and is upregulated by heat shock. Cell Stress and Chaperones, 16 (4). 389 - 401. ISSN 1355-8145

Gokhale, A and Rwigema, JC and Epperly, MW and Glowacki, J and Wang, H and Wipf, P and Goff, JP and Dixon, T and Patrene, K and Greenberger, JS (2010) Small molecule GS-nitroxide ameliorates ionizing irradiation-induced delay in bone wound healing in a novel murine model. In Vivo, 24 (4). 377 - 385. ISSN 0258-851X

Fuller, AA and Du, D and Liu, F and Davoren, JE and Bhabha, G and Kroon, G and Case, DA and Dyson, HJ and Powers, ET and Wipf, P and Gruebele, M and Kelly, JW (2009) Evaluating β-turn mimics as β-sheet folding nucleators. Proceedings of the National Academy of Sciences of the United States of America, 106 (27). 11067 - 11072. ISSN 0027-8424

Rajagopalan, MS and Gupta, K and Epperly, MW and Franicola, D and Zhang, X and Wang, H and Zhao, H and Tyurin, VA and Pierce, JG and Kagan, VE and Wipf, P and Kanai, AJ and Greenberger, JS (2009) The mitochondria-targeted nitroxide JP4-039 augments potentially lethal irradiation damage repair. In Vivo, 23 (5). 717 - 726. ISSN 0258-851X

Hopkins, CD and Wipf, P (2009) Isolation, biology and chemistry of the disorazoles: New anti-cancer macrodiolides. Natural Product Reports, 26 (5). 585 - 601. ISSN 0265-0568

Johnston, PA and Foster, CA and Tierno, MB and Shun, TY and Shinde, SN and Paquette, WD and Brummond, KM and Wipf, P and Lazo, JS (2009) Cdc25B Dual-specificity phosphatase inhibitors identified in a high-throughput screen of the NIH compound library. Assay and Drug Development Technologies, 7 (3). 250 - 265. ISSN 1540-658X

Chiang, AN and Valderramos, JC and Balachandran, R and Chovatiya, RJ and Mead, BP and Schneider, C and Bell, SL and Klein, MG and Huryn, DM and Chen, XS and Day, BW and Fidock, DA and Wipf, P and Brodsky, JL (2009) Select pyrimidinones inhibit the propagation of the malarial parasite, Plasmodium falciparum. Bioorganic and Medicinal Chemistry, 17 (4). 1527 - 1533. ISSN 0968-0896

Wright, CM and Seguin, SP and Fewell, SW and Zhang, H and Ishwad, C and Vats, A and Lingwood, CA and Wipf, P and Fanning, E and Pipas, JM and Brodsky, JL (2009) Inhibition of Simian Virus 40 replication by targeting the molecular chaperone function and ATPase activity of T antigen. Virus Research, 141 (1). 71 - 80. ISSN 0168-1702

Sharlow, ER and Giridhar, KV and LaValle, CR and Chen, J and Leimgruber, S and Barrett, R and Bravo-Altamirano, K and Wipf, P and Lazo, JS and Wang, QJ (2008) Potent and selective disruption of protein kinase D functionality by a benzoxoloazepinolone. Journal of Biological Chemistry, 283 (48). 33516 - 33526. ISSN 0021-9258

Rabu, C and Wipf, P and Brodsky, JL and High, S (2008) A precursor-specific role for Hsp40/Hsc70 during tail-anchored protein integration at the endoplasmic reticulum. Journal of Biological Chemistry, 283 (41). 27504 - 27513. ISSN 0021-9258

Liu, F and Du, D and Fuller, AA and Davoren, JE and Wipf, P and Kelly, JW and Gruebele, M (2008) An experimental survey of the transition between two-state and downhill protein folding scenarios. Proceedings of the National Academy of Sciences of the United States of America, 105 (7). 2369 - 2374. ISSN 0027-8424

Burnett, JC and Ruthel, G and Stegmann, CM and Panchal, RG and Nguyen, TL and Hermone, AR and Stafford, RG and Lane, DJ and Kenny, TA and McGrath, CF and Wipf, P and Stahl, AM and Schmidt, JJ and Gussio, R and Brunger, AT and Bavari, S (2007) Inhibition of metalloprotease botulinum serotype A from a pseudo-peptide binding mode to a small molecule that is active in primary neurons. Journal of Biological Chemistry, 282 (7). 5004 - 5014. ISSN 0021-9258

Levinson, N and Hinman, R and Patil, A and Stephenson, CRJ and Werner, S and Woo, GHC and Xiao, J and Wipf, P and Lynch, KW (2006) Use of transcriptional synergy to augment sensitivity of a splicing reporter assay. RNA, 12 (5). 925 - 930. ISSN 1355-8382

Fewell, SW and Smith, CM and Lyon, MA and Dumitrescu, TP and Wipf, P and Day, BW and Brodsky, JL (2004) Small molecule modulators of endogenous and co-chaperone-stimulated Hsp70 ATPase activity. Journal of Biological Chemistry, 279 (49). 51131 - 51140. ISSN 0021-9258

Zaware, N and LaPorte, MG and Farid, R and Liu, L and Wipf, P and Floreancig, PE (2011) Diversity-oriented synthesis of a library of substituted tetrahydropyrones using oxidative carbon-hydrogen bond activation and click chemistry. Molecules, 16 (5). 3648 - 3662.

Wipf, Peter and Kendall, Christopher (2002) Novel applications of alkenyl zirconocenes. Chemistry, 8 (8). 1778 - 1784. ISSN 0947-6539

Wipf, P and Uto, Y and Yoshimura, S (2002) Total synthesis of a stereoisomer of bistramide C and assignment of configuration of the natural product. Chemistry (Weinheim an der Bergstrasse, Germany), 8 (7). ISSN 0947-6539

Braunstein, MJ and Scott, SS and Scott, CM and Behrman, S and Walter, P and Wipf, P and Coplan, JD and Chrico, W and Joseph, D and Brodsky, JL and Batuman, O (2011) Antimyeloma effects of the heat shock protein 70 molecular chaperone inhibitor MAL3-101. Journal of Oncology. ISSN 1687-8450

Xu, FL and Rbaibi, Y and Kiselyov, K and Lazo, JS and Wipf, P and Saunders, WS (2010) Mitotic slippage in non-cancer cells induced by a microtubule disruptor, disorazole C<inf>1</inf>. BMC Chemical Biology, 10.

Lavalle, CR and Bravo-Altamirano, K and Giridhar, KV and Chen, J and Sharlow, E and Lazo, JS and Wipf, P and Wang, QJ (2010) Novel protein kinase D inhibitors cause potent arrest in prostate cancer cell growth and motility. BMC Chemical Biology, 10.

Goff, JP and Epperly, MW and Dixon, T and Wang, H and Franicola, D and Shields, D and Wipf, P and Li, S and Gao, X and Greenberger, JS (2011) Radiobiologic effects of GS-nitroxide (JP4-039) on the hematopoietic syndrome. In Vivo, 25 (3). 315 - 323. ISSN 0258-851X

Keffer, JL and Hammill, JT and Lloyd, JR and Plaza, A and Wipf, P and Bewley, CA (2012) Geographic variability and anti-staphylococcal activity of the chrysophaentins and their synthetic fragments. Marine Drugs, 10 (5). 1103 - 1125.

George, KM and Frantz, MC and Bravo-Altamirano, K and la Valle, CR and Tandon, M and Leimgruber, S and Sharlow, ER and Lazo, JS and Jane Wang, Q and Wipf, P (2011) Design, synthesis, and biological evaluation of PKD inhibitors. Pharmaceutics, 3 (2). 186 - 228.

Wipf, P and Manojlovic, MD (2011) Homoallylic amines by reductive inter- and intramolecular coupling of allenes and nitriles. Beilstein Journal of Organic Chemistry, 7. 824 - 830. ISSN 1860-5397

Epperly, MW and Goff, JP and Li, S and Gao, X and Wipf, P and Dixon, T and Wang, H and Franicola, D and Shen, H and Rwigema, JCM and Kagan, V and Bernard, M and Greenberger, JS (2010) Intraesophageal administration of GS-nitroxide (JP4-039) protects against ionizing irradiation-induced esophagitis. In Vivo, 24 (6). 811 - 819. ISSN 0258-851X

Epperly, MW and Franicola, D and Shields, D and Rwigema, JC and Stone, B and Zhang, X and Mcbride, W and Georges, G and Wipf, P and Greenberger, JS (2010) Screening of antimicrobial agents for in vitro radiation protection and mitigation capacity, including those used in supportive care regimens for bone marrow transplant recipients. In Vivo, 24 (1). 9 - 19. ISSN 0258-851X

Wipf, P and Xiao, J and Stephenson, CRJ (2009) Peptide-Like Molecules (PLMs): A journey from peptide bond isosteres to gramicidin s mimetics and mitochondrial targeting agents. Chimia, 63 (11). 764 - 775. ISSN 0009-4293

Ribe, S and Wipf, P (2001) Water-accelerated organic transformations. Chemical Communications (4). 299 - 307. ISSN 1359-7345

Rimphanitchayakit, V and Hatfull, GF and Grindley, ND (1989) The 43 residue DNA binding domain of gamma delta resolvase binds adjacent major and minor grooves of DNA. Nucleic Acids Res, 17 (3). 1035 - 1050. ISSN 0305-1048

Robinson, AC and Kenan, DJ and Hatfull, GF and Sullivan, NF and Spiegelberg, R and Donachie, WD (1984) DNA sequence and transcriptional organization of essential cell division genes ftsQ and ftsA of Escherichia coli: Evidence for overlapping transcriptional units. Journal of Bacteriology, 160 (2). 546 - 555. ISSN 0021-9193

Ma, L and Sikirzhytski, V and Hong, Z and Lednev, IK and Asher, SA (2013) Insight into resolution enhancement in generalized two-dimensional correlation spectroscopy. Applied Spectroscopy, 67 (3). 283 - 290. ISSN 0003-7028

Wipf, P and Tsuchimoto, T and Takahashi, H (1999) Synthetic applications of ortho esters. Pure and Applied Chemistry, 71 (3). 415 - 421. ISSN 0033-4545