Browse by Depositor

Marella, M and Seo, BB and Nakamaru-Ogiso, E and Greenamyre, JT and Matsuno-Yagi, A and Yagi, T (2008) Protection by the NDI1 gene against neurodegeneration in a rotenone rat model of Parkinson's disease. PLoS ONE, 3 (1).

Norton, JD and Roberts, BW (2012) Galileo's refutation of the speed-distance law of fall rehabilitated. Centaurus, 54 (2). 148 - 164. ISSN 0008-8994

Norton, JD (2012) Approximation and idealization: Why the difference matters. Philosophy of Science, 79 (2). 207 - 232. ISSN 0031-8248

Norton, JD (2011) Challenges to Bayesian Confirmation Theory. In: Philosophy of Statistics. UNSPECIFIED, 391 - 439. ISBN 9780444518620

Norton, JD (2011) Waiting for Landauer. Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics, 42 (3). 184 - 198. ISSN 1355-2198

Norton, JD (2011) Observationally Indistinguishable Spacetimes: A Challenge for Any Inductivist. In: Philosophy of Science Matters: The Philosophy of Peter Achinstein. UNSPECIFIED. ISBN 9780199738625

Norton, JD (2011) Little boxes: A simple implementation of the Greenberger, Horne, and Zeilinger result for spatial degrees of freedom. American Journal of Physics, 79 (2). 182 - 188. ISSN 0002-9505

Norton, John D (2010) Time Really Passes. Humana.Mente: Journal of Philosophical Studies, 13. 23 - 24.

Norton, JD (2010) Deductively Definable Logics of Induction. Journal of Philosophical Logic, 39 (6). 617 - 654. ISSN 0022-3611

Norton, John D (2010) How Hume and Mach Helped Einstein Find Special Relativity. In: Discourse on a New Method: Reinvigorating the Marriage of History and Philosophy of Science. Open Court, Chicago and La Salle, IL, 359 - 386. ISBN 9780812696622

Norton, JD (2008) Ignorance and indifference. Philosophy of Science, 75 (1). 45 - 68. ISSN 0031-8248

Norton, JD (2007) Probability disassembled. British Journal for the Philosophy of Science, 58 (2). 141 - 171. ISSN 0007-0882

Norton, JD (2006) Atoms, entropy, quanta: Einstein's miraculous argument of 1905. Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics, 37 (1 SPEC). 71 - 100. ISSN 1355-2198

Norton, JD (2005) Eaters of the lotus: Landauer's principle and the return of Maxwell's demon. Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics, 36 (2). 375 - 411. ISSN 1355-2198

Norton, John D (2005) A Conjecture on Einstein, the Independent Reality of Spacetime Coordinate Systems and the Disaster of 1913. In: The Universe of General Relativity. Einstein Studies, 11 . Birkhäuser, Boston, 67 - 102. ISBN 081764380X

Rho, Young-Ah and Prescott, Steven A. (2012) Identification of Molecular Pathologies Sufficient to Cause Neuropathic Excitability in Primary Somatosensory Afferents Using Dynamical Systems Theory. PLoS Computational Biology, 8 (5). e1002524 - e1002524.

Miedel, MT and Graf, NJ and Stephen, KE and Long, OS and Pak, SC and Perlmutter, DH and Silverman, GA and Luke, CJ (2012) A pro-cathepsin L mutant is a luminal substrate for endoplasmic-reticulum-associated degradation in C. elegans. PLoS ONE, 7 (7).

Awuah, PK and Rhieu, BH and Singh, S and Misse, A and Monga, SPS (2012) β-Catenin loss in hepatocytes promotes hepatocellular cancer after diethylnitrosamine and phenobarbital administration to mice. PLoS ONE, 7 (6).

Unlu, S and Tang, S and Wang, EN and Martinez, I and Tang, D and Bianchi, ME and Zeh, HJ and Lotze, MT (2012) Damage associated molecular pattern molecule-induced micrornas (DAMPmiRs) in human peripheral blood mononuclear cells. PLoS ONE, 7 (6).

Rosenbaum, R and Rubin, J and Doiron, B (2012) Short term synaptic depression imposes a frequency dependent filter on synaptic information transfer. PLoS Computational Biology, 8 (6). ISSN 1553-734X

Achtman, M and Wain, J and Weill, FX and Nair, S and Zhou, Z and Sangal, V and Krauland, MG and Hale, JL and Harbottle, H and Uesbeck, A and Dougan, G and Harrison, LH and Brisse, S (2012) Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathogens, 8 (6). ISSN 1553-7366

Aldrich, MC and Kumar, R and Colangelo, LA and Williams, LK and Sen, S and Kritchevsky, SB and Meibohm, B and Galanter, J and Hu, D and Gignoux, CR and Liu, Y and Harris, TB and Ziv, E and Zmuda, J and Garcia, M and Leak, TS and Foreman, MG and Smith, LJ and Fornage, M and Liu, K and Burchard, EG (2012) Genetic ancestry-smoking interactions and lung function in African Americans: A cohort Study. PLoS ONE, 7 (6).

Zou, H and Volonte, D and Galbiati, F (2012) Interaction of caveolin-1 with Ku70 inhibits Bax-mediated apoptosis. PLoS ONE, 7 (6).

Maly, Ivan V. (2012) Equilibria of Idealized Confined Astral Microtubules and Coupled Spindle Poles. PLoS ONE, 7 (6). e38921 - e38921.

Roecklein, KA and Schumacher, JA and Miller, MA and Ernecoff, NC (2012) Cognitive and behavioral predictors of light therapy use. PLoS ONE, 7 (6).

Lockman, S and Hughes, M and Sawe, F and Zheng, Y and McIntyre, J and Chipato, T and Asmelash, A and Rassool, M and Kimaiyo, S and Shaffer, D and Hosseinipour, M and Mohapi, L and Ssali, F and Chibowa, M and Amod, F and Halvas, E and Hogg, E and Alston-Smith, B and Smith, L and Schooley, R and Mellors, J and Currier, J (2012) Nevirapine- versus lopinavir/ritonavir-based initial therapy for HIV-1 infection among women in africa: A randomized trial. PLoS Medicine, 9 (6). 15 - ?. ISSN 1549-1277

Komarov, Ivan and D’Souza, Roshan M and Tapia, Jose-Juan (2012) Accelerating the Gillespie τ-Leaping Method Using Graphics Processing Units. PLoS ONE, 7 (6). e37370 - e37370.

Taylor, DL and Bina, XR and Bina, JE (2012) Vibrio cholerae vexH encodes a multiple drug efflux pump that contributes to the production of cholera toxin and the toxin co-regulated pilus. PLoS ONE, 7 (5).

Cicek, MS and Cunningham, JM and Fridley, BL and Serie, DJ and Bamlet, WR and Diergaarde, B and Haile, RW and Le Marchand, L and Krontiris, TG and Younghusband, HB and Gallinger, S and Newcomb, PA and Hopper, JL and Jenkins, MA and Casey, G and Schumacher, F and Chen, Z and DeRycke, MS and Templeton, AS and Winship, I and Green, RC and Green, JS and Macrae, FA and Parry, S and Young, GP and Young, JP and Buchanan, D and Thomas, DC and Bishop, DT and Lindor, NM and Thibodeau, SN and Potter, JD and Goode, EL (2012) Colorectal cancer linkage on chromosomes 4q21, 8q13, 12q24, and 15q22. PLoS ONE, 7 (5).

Maly, Ivan V. (2012) Efficiency of Organelle Capture by Microtubules as a Function of Centrosome Nucleation Capacity: General Theory and the Special Case of Polyspermia. PLoS ONE, 7 (5). e37675 - e37675.

Graves, JA and Wang, Y and Sims-Lucas, S and Cherok, E and Rothermund, K and Branca, MF and Elster, J and Beer-Stolz, D and van Houten, B and Vockley, J and Prochownik, EV (2012) Mitochondrial structure, function and dynamics are temporally controlled by c-Myc. PLoS ONE, 7 (5).

Bringaud, F and Müller, M and Cerqueira, GC and Smith, M and Rochette, A and El-Sayed, NMA and Papadopoulou, B and Ghedin, E (2007) Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania. PLoS Pathogens, 3 (9). 1291 - 1307. ISSN 1553-7366

Arkhipov, Sergey N. and Maly, Ivan V. (2007) A Model for the Interplay of Receptor Recycling and Receptor-Mediated Contact in T Cells. PLoS ONE, 2 (7). e633 - e633.

Abbas, UL and Anderson, RM and Mellors, JW (2007) Potential impact of antiretroviral chemoprophylaxis on HIV-1 transmission in resource-limited settings. PLoS ONE, 2 (9).

Chennubhotla, C and Bahar, I (2007) Erratum: Signal propagation in proteins and relation to equilibrium fluctuations (PLoS Computational Biology (2007) 3, 9, (e172) DOI: 10.1371/journal.pcbi.0030172)). PLoS Computational Biology, 3 (10). 2043 - ?. ISSN 1553-734X

Pagans, S and Pedal, A and North, BJ and Kaehlcke, K and Marshall, BL and Dorr, A and Hetzer-Egger, C and Henklein, P and Frye, R and McBurney, MW and Hruby, H and Jung, M and Verdin, E and Ott, M (2005) SIRT1 regulates HIV transcription via Tat deacetylation. PLoS Biology, 3 (2). 0210 - 0220. ISSN 1544-9173

Han, K and Yeo, G and An, P and Burge, CB and Grabowski, PJ (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biology, 3 (5). 0843 - 0860. ISSN 1544-9173

Thiel, M and Chouker, A and Ohta, A and Jackson, E and Caldwell, C and Smith, P and Lukashev, D and Bittmann, I and Sitkovsky, MV (2005) Oxygenation inhibits the physiological tissue-protecting mechanism and thereby exacerbates acute inflammatory lung injury. PLoS Biology, 3 (6). 1088 - 1100. ISSN 1544-9173

Tolwani, RJ and Hamm, DA and Tian, L and Sharer, JD and Vockley, J and Rinaldo, P and Matern, D and Schoeb, TR and Wood, PA (2005) Medium-chain acyl-CoA dehydrogenase deficiency in gene-targeted mice. PLoS Genetics, 1 (2). 0205 - 0212. ISSN 1553-7390

Pardo, A and Gibson, K and Cisneros, J and Richards, TJ and Yang, Y and Becerril, C and Yousem, S and Herrera, I and Ruiz, V and Selman, M and Kaminski, N (2005) Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis. PLoS Medicine, 2 (9). 0891 - 0903. ISSN 1549-1277

Azad, RK and Lawrence, JG (2005) Use of artificial genomes in assessing methods for atypical gene detection. PLoS Computational Biology, 1 (6). 0461 - 0473. ISSN 1553-734X

Steele, C and Rapaka, RR and Metz, A and Pop, SM and Williams, DL and Gordon, S and Kolls, JK and Brown, GD (2005) The beta-glucan receptor dectin-1 recognizes specific morphologies of aspergillus fumigatus. PLoS Pathogens, 1 (4). 0323 - 0334. ISSN 1553-7366

Almaas, Eivind and Oltvai, Zoltán N and Barabási, Albert-László (2005) The activity reaction core and plasticity of metabolic networks. PLoS Comput Biol, 1 (7). e68 - ?.

Belov, K and Deakin, JE and Papenfuss, AT and Baker, ML and Melman, SD and Siddle, HV and Gouin, N and Goode, DL and Sargeant, TJ and Robinson, MD and Wakefield, MJ and Mahony, S and Cross, JGR and Benos, PV and Samollow, PB and Speed, TP and Marshall Graves, JA and Miller, RD (2006) Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex. PLoS Biology, 4 (3). 0317 - 0328. ISSN 1545-7885

Baysal, Bora (2006) Mitochondria: More than Mitochondrial DNA in Cancer. PLoS Medicine, 3 (3). e156 - e156.

Ghosh, P and Wasil, LR and Hatfull, GF (2006) Control of phage Bxb1 excision by a novel recombination directionality factor. PLoS Biology, 4 (6). 0964 - 0974. ISSN 1545-7885

Hatfull, GF and Pedulla, ML and Jacobs-Sera, D and Cichon, PM and Foley, A and Ford, ME and Gonda, RM and Houtz, JM and Hryckowian, AJ and Kelchner, VA and Namburi, S and Pajcini, KV and Popovich, MG and Schleicher, DT and Simanek, BZ and Smith, AL and Zdanowicz, GM and Kumar, V and Peebles, CL and Jacobs, WR and Lawrence, JG and Hendrix, RW (2006) Exploring the mycobacteriophage metaproteome: Phage genomics as an educational platform. PLoS Genetics, 2 (6). 0835 - 0847. ISSN 1553-7390

Rappocciolo, G and Piazza, P and Fuller, CL and Reinhart, TA and Watkins, SC and Rowe, DT and Jais, M and Gupta, P and Rinaldo, CR (2006) Erratum: DC-SIGN on B lymphocytes is required for transmission of HIV-1 to T lymphocytes (Plos Pathogens 2, 7 (3) DOI:10.1371/journal.ppat.0020070). PLoS Pathogens, 2 (8). 0808 - ?. ISSN 1553-7366

Hsia, Judith and Manson, Joann E and Kuller, Lewis and Pettinger, Mary and Choe, John H and Langer, Robert D and Limacher, Marian and Oberman, Albert and Ockene, Judith and O'Sullivan, Mary Jo and Robinson, Jennifer G and Women's Health Initiative Research, (2006) Impact of cyclooxygenase inhibitors in the Women's Health Initiative hormone trials: secondary analysis of a randomized trial. PLoS Clin Trials, 1 (5). e26 - ?.

Kronmal, RA and Barzilay, JI and Smith, NL and Psaty, BM and Kuller, LH and Burke, GL and Furberg, C (2006) Mortality in pharmacologically treated older adults with diabetes: The cardiovascular health study, 1989-2001. PLoS Medicine, 3 (10). 1883 - 1891. ISSN 1549-1277

Figueiredo, A and Moore, KL and Mak, J and Sluis-Cremer, N and De Bethune, MP and Tachedjian, G (2006) Potent nonnucleoside reverse transcriptase inhibitors target HIV-1 Gag-Pol. PLoS Pathogens, 2 (11). 1051 - 1059. ISSN 1553-7366

Pogue-Geile, KL and Chen, R and Bronner, MP and Crnogorac-Jurcevic, T and Moyes, KW and Dowen, S and Otey, CA and Crispin, DA and George, RD and Whitcomb, DC and Brentnall, TA (2006) Palladin mutation causes familial pancreatic cancer and suggests a new cancer mechanism. PLoS Medicine, 3 (12). 2216 - 2228. ISSN 1549-1277

Hultman, KA and Bahary, N and Zon, LI and Johnson, SL (2007) Gene duplication of the zebrafish kit ligand and partitioning of melanocyte development functions to kit ligand a. PLoS Genetics, 3 (1). 0089 - 0102. ISSN 1553-7390

An, P and Grabowski, PJ (2007) Exon silencing by UAGG motifs in response to neuronal excitation. PLoS Biology, 5 (2). 0263 - 0280. ISSN 1544-9173

Piwowar, HA and Day, RS and Fridsma, DB (2007) Sharing detailed research data is associated with increased citation rate. PLoS ONE, 2 (3).

Mahony, S and Auron, PE and Benos, PV (2007) DNA familial binding profiles made easy: Comparison of various motif alignment and clustering strategies. PLoS Computational Biology, 3 (3). 0578 - 0591. ISSN 1553-734X

Maldarelli, F and Palmer, S and King, MS and Wiegand, A and Polis, MA and Mican, JA and Kovacs, JA and Davey, RT and Rock-Kress, D and Dewar, R and Liu, S and Metcalf, JA and Rehm, C and Brun, SC and Hanna, GJ and Kempf, DJ and Coffin, JM and Mellors, JW (2007) ART suppresses plasma HIV-1 RNA to a stable set point predicted by pretherapy viremia. PLoS Pathogens, 3 (4). 484 - 488. ISSN 1553-7366

Lee, J and Li, Z and Brower-Sinning, R and John, B (2007) Regulatory circuit of human microRNA biogenesis. PLoS Computational Biology, 3 (4). 721 - 732. ISSN 1553-734X

Baysal, Bora E. (2007) A Recurrent Stop-Codon Mutation in Succinate Dehydrogenase Subunit B Gene in Normal Peripheral Blood and Childhood T-Cell Acute Leukemia. PLoS ONE, 2 (5). e436 - e436.

Lo, WS and Xu, Z and Yu, Z and Pun, FW and Ng, SK and Chen, J and Tong, KL and Zhao, C and Xu, X and Tsang, SY and Harano, M and Stöber, G and Nimgaonkar, VL and Xue, H (2007) Positive selection within the schizophrenia-associated GABA<inf>A</inf> receptor β<inf>2</inf> gene. PLoS ONE, 2 (5).

Selman, Moisés and Carrillo, Guillermo and Estrada, Andrea and Mejia, Mayra and Becerril, Carina and Cisneros, José and Gaxiola, Miguel and Pérez-Padilla, Rogelio and Navarro, Carmen and Richards, Thomas and Dauber, James and King, Talmadge E and Pardo, Annie and Kaminski, Naftali (2007) Accelerated Variant of Idiopathic Pulmonary Fibrosis: Clinical Behavior and Gene Expression Pattern. PLoS ONE, 2 (5). e482 - e482.

Kooperbergl, C and Cushman, M and Hsia, J and Robinson, JG and Aragaki, AK and Lynch, JK and Baird, AE and Johnson, KC and Kuller, LH and Beresford, SAA and Rodriguez, B (2007) Can biomarkers identify women at increased stroke risk? The Women's Health Initiative hormone trials. PLoS Clinical Trials, 2 (6).

An, P and Li, HW and Hutcheson-Dilks, H and Nelson, G and Donfield, S and Goedert, JJ and Rinaldo, CR and Buchbinder, S and Kirk, GD and O'Brien, SJ and Winkler, CA (2007) Regulatory polymorphisms in the cyclophilin A gene, PPIA, accelerate progression to AIDS. PLoS Pathogens, 3 (6). 0849 - 0857. ISSN 1553-7366

Brodsky, LI and Wahed, AS and Li, J and Tavis, JE and Tsukahara, T and Taylor, MW (2007) A Novel Unsupervised Method to Identify Genes Important in the Anti-viral Response: Application to Interferon/Ribavirin in Hepatitis C Patients. PLoS ONE, 2 (7).

Vandenbroucke, JP and Von Elm, E and Altman, DG and Gøtzsche, PC and Mulrow, CD and Pocock, SJ and Poole, C and Schlesselman, JJ and Egger, M (2007) Strengthening the Reporting of Observational Studies in Epidemiology (STROBE): Explanation and elaboration. PLoS Medicine, 4 (10). 1628 - 1654. ISSN 1549-1277

Marino, S and Sud, D and Plessner, H and Lin, PL and Chan, J and Flynn, JAL and Kirschner, DE (2007) Differences in reactivation of tuberculosis induced from anti-tnf treatments are based on bioavailability in granulomatous tissue. PLoS Computational Biology, 3 (10). 1909 - 1924. ISSN 1553-734X

Zhao, J and Punj, V and Matta, H and Mazzacurati, L and Schamus, S and Yang, Y and Yang, T and Hong, Y and Chaudhary, PM (2007) K13 blocks KSHV lytic replication and deregulates vIL6 nad hIL6 expression: A model of lytic replication induced clonal selection in viral oncogenesis. PLoS ONE, 2 (10).

Zenker, S and Rubin, J and Clermont, G (2007) From inverse problems in mathematical physiology to quantitative differential diagnoses. PLoS Computational Biology, 3 (11). 2072 - 2086. ISSN 1553-734X

Kumar, S and Chaudhary, K and Foster, JM and Novelli, JF and Zhang, Y and Wang, S and Spiro, D and Ghedin, E and Carlow, CKS (2007) Mining predicted essential genes of Brugia malayi for nematode drug targets. PLoS ONE, 2 (11).

Yap, Soo-Huey and Sheen, Chih-Wei and Fahey, Jonathan and Zanin, Mark and Tyssen, David and Lima, Viviane Dias and Wynhoven, Brian and Kuiper, Michael and Sluis-Cremer, Nicolas and Harrigan, P Richard and Tachedjian, Gilda (2007) N348I in the Connection Domain of HIV-1 Reverse Transcriptase Confers Zidovudine and Nevirapine Resistance. PLoS Medicine, 4 (12). e335 - e335.

Bright, RA and Carter, DM and Crevar, CJ and Toapanta, FR and Steckbeck, JD and Cole, KS and Kumar, NM and Pushko, P and Smith, G and Tumpey, TM and Ross, TM (2008) Cross-clade protective immune responses to influenza viruses with H5N1 HA and NA elicited by an influenza virus-like particle. PLoS ONE, 3 (1).

Pacheco, AG and Tuboi, SH and Faulhaber, JC and Harrison, LH and Schechter, M (2008) Increase in non-AIDS related conditions as causes of death among HIV-infected individuals in the HAART era in Brazil. PLoS ONE, 3 (1).

Herbeck, JT and Gottlieb, GS and Li, X and Hu, Z and Detels, R and Phair, J and Rinaldo, C and Jacobson, LP and Margolick, JB and Mullins, JI (2008) Lack of evidence for changing virulence of HIV-1 in North America. PLoS ONE, 3 (2).

Dolinay, T and Wu, W and Kaminski, N and Ifedigbo, E and Kaynar, AM and Szilasi, M and Watkins, SC and Ryter, SW and Hoetzel, A and Choi, AMK (2008) Mitogen-activated protein kinases regulate susceptibility to ventilator-induced lung injury. PLoS ONE, 3 (2).

Nelson, MI and Viboud, C and Simonsen, L and Bennett, RT and Griesemer, SB and St. George, K and Taylor, J and Spiro, DJ and Sengamalay, NA and Ghedin, E and Taubenberger, JK and Holmes, EC (2008) Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918. PLoS Pathogens, 4 (2). ISSN 1553-7366

Oliver, TR and Feingold, E and Yu, K and Cheung, V and Tinker, S and Yadav-Shah, M and Masse, N and Sherman, SL (2008) New insights into human nondisjunction of chromosome 21 in oocytes. PLoS Genetics, 4 (3). ISSN 1553-7390

Ernst, J and Beg, QK and Kay, KA and Balázsi, G and Oltvai, ZN and Bar-Joseph, Z (2008) A semi-supervised method for predicting transcription factor-gene interactions in Escherichia coli. PLoS Computational Biology, 4 (3). ISSN 1553-734X

Aoun, E and Chang, CCH and Greer, JB and Papachristou, GI and Barmada, MM and Whitcomb, DC (2008) Pathways to injury in chronic pancreatitis: Decoding the role of the high-risk SPINK1 N34S haplotype using meta-analysis. PLoS ONE, 3 (4).

Vodovotz, Y and Csete, M and Bartels, J and Chang, S and An, G (2008) Translational systems biology of inflammation. PLoS Computational Biology, 4 (4). ISSN 1553-734X

Rosas, IO and Richards, TJ and Konishi, K and Zhang, Y and Gibson, K and Lokshin, AE and Lindell, KO and Cisneros, J and MacDonald, SD and Pardo, A and Sciurba, F and Dauber, J and Selman, M and Gochuico, BR and Kaminski, N (2008) MMP1 and MMP7 as potential peripheral blood biomarkers in idiopathic pulmonary fibrosis. PLoS Medicine, 5 (4). 0623 - 0633. ISSN 1549-1277

Garforth, SJ and Parniak, MA and Prasad, VR (2008) Utilization of a deoxynucleoside diphosphate substrate by HIV reverse transcriptase. PLoS ONE, 3 (4).

Hong, SK and Tsang, M and Dawid, IB (2008) The Mych gene is required for neural crest survival during zebrafish development. PLoS ONE, 3 (4).

Li, J and McClane, BA (2008) A novel small acid soluble protein variant is important for spore resistance of most clostridium perfringens food poisoning isolates. PLoS Pathogens, 4 (5). ISSN 1553-7366

Schadt, EE and Molony, C and Chudin, E and Hao, K and Yang, X and Lum, PY and Kasarskis, A and Zhang, B and Wang, S and Suver, C and Zhu, J and Millstein, J and Sieberts, S and Lamb, J and GuhaThakurta, D and Derry, J and Storey, JD and Avila-Campillo, I and Kruger, MJ and Johnson, JM and Rohl, CA and Van Nas, A and Mehrabian, M and Drake, TA and Lusis, AJ and Smith, RC and Guengerich, FP and Strom, SC and Schuetz, E and Rushmore, TH and Ulrich, R (2008) Mapping the genetic architecture of gene expression in human liver. PLoS Biology, 6 (5). 1020 - 1032. ISSN 1544-9173

Melzer, D and Perry, JRB and Hernandez, D and Corsi, AM and Stevens, K and Rafferty, I and Lauretani, F and Murray, A and Gibbs, JR and Paolisso, G and Rafiq, S and Simon-Sanchez, J and Lango, H and Scholz, S and Weedon, MN and Arepalli, S and Rice, N and Washecka, N and Hurst, A and Britton, A and Henley, W and Van De Leemput, J and Li, R and Newman, AB and Tranah, G and Harris, T and Panicker, V and Dayan, C and Bennett, A and McCarthy, MI and Ruokonen, A and Jarvelin, MR and Guralnik, J and Bandinelli, S and Frayling, TM and Singleton, A and Ferrucci, L (2008) A genome-wide association study identifies protein quantitative trait loci (pQTLs). PLoS Genetics, 4 (5). ISSN 1553-7390

Jakobsdottir, J and Conley, YP and Weeks, DE and Ferrell, RE and Gorin, MB (2008) C2 and CFB genes in Age-related maculopathy and joint action with CFH and LOC387715 genes. PLoS ONE, 3 (5).

Bagci, EZ and Vodovotz, Y and Billiar, TR and Ermentrout, B and Bahar, I (2008) Computational insights on the competing effects of nitric oxide in regulating apoptosis. PLoS ONE, 3 (5).

Buchinsky, FJ and Donfack, J and Derkay, CS and Choi, SS and Conley, SF and Myer, CM and McClay, JE and Campisi, P and Wiatrak, BJ and Sobol, SE and Schweinfurth, JM and Tsuji, DH and Hu, FZ and Rockette, HE and Ehrlich, GD and Post, JC (2008) Age of child, more than HPV type, is associated with clinical course in recurrent respiratory papillomatosis. PLoS ONE, 3 (5).

Taylor, KE and Remmers, EF and Lee, AT and Ortmann, WA and Plenge, RM and Tian, C and Chung, SA and Nititham, J and Hom, G and Kao, AH and Demirci, FY and Kamboh, MI and Petri, M and Manzi, S and Kastner, DL and Seldin, MF and Gregersen, PK and Behrens, TW and Criswell, LA (2008) Specificity of the STAT4 genetic association for severe disease manifestations of systemic lupus erythematosus. PLoS Genetics, 4 (5). ISSN 1553-7390

Dugan, VG and Chen, R and Spiro, DJ and Sengamalay, N and Zaborsky, J and Ghedin, E and Nolting, J and Swayne, DE and Runstadler, JA and Happ, GM and Senne, DA and Wang, R and Slemons, RD and Holmes, EC and Taubenberger, JK (2008) The evolutionary genetics and emergence of avian influenza viruses in wild birds. PLoS Pathogens, 4 (5). ISSN 1553-7366

Stahl, JE and Kreke, JE and Abdul Malek, FA and Schaefer, AJ and Vacanti, J (2008) Consequences of cold-ischemia time on primary nonfunction and patient and graft survival in liver transplantation: A meta-analysis. PLoS ONE, 3 (6).

Ahmad, F and Banerjee, SK and Lage, ML and Huang, XN and Smith, SH and Saba, S and Rager, J and Conner, DA and Janczewski, AM and Tobita, K and Tinney, JP and Moskowitz, IP and Perez-Atayde, AR and Keller, BB and Mathier, MA and Shroff, SG and Seidman, CE and Seidman, JG (2008) The role of cardiac troponin T quantity and function in cardiac development and dilated cardiomyopathy. PLoS ONE, 3 (7).

Li, NYK and Verdolini, K and Clermont, G and Mi, Q and Rubinstein, EN and Hebda, PA and Vodovotz, Y (2008) A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury. PLoS ONE, 3 (7).

Schumacher, B and Van Der Pluijm, I and Moorhouse, MJ and Kosteas, T and Robinson, AR and Suh, Y and Breit, TM and Van Steeg, H and Niedernhofer, LJ and Van Ijcken, W and Bartke, A and Spindler, SR and Hoeijmakers, JHJ and Van Der Hors, GTJ and Garinis, GA (2008) Delayed and accelerated aging share common longevity assurance mechanisms. PLoS Genetics, 4 (8). ISSN 1553-7390

Nelson, MI and Edelman, L and Spiro, DJ and Boyne, AR and Bera, J and Halpin, R and Ghedin, E and Miller, MA and Simonsen, L and Viboud, C and Holmes, EC (2008) Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States. PLoS Pathogens, 4 (8). ISSN 1553-7366

Levina, V and Marrangoni, AM and DeMarco, R and Gorelik, E and Lokshin, AE (2008) Drug-selected human lung cancer stem cells: Cytokine network, tumorigenic and metastatic properties. PLoS ONE, 3 (8).

Melzer, Nico and Meuth, Sven G. and Torres-Salazar, Delany and Bittner, Stefan and Zozulya, Alla L. and Weidenfeller, Christian and Kotsiari, Alexandra and Stangel, Martin and Fahlke, Christoph and Wiendl, Heinz (2008) A β-Lactam Antibiotic Dampens Excitotoxic Inflammatory CNS Damage in a Mouse Model of Multiple Sclerosis. PLoS ONE, 3 (9). e3149 - e3149.

Lu, YJ and Gross, J and Bogaert, D and Finn, A and Bagrade, L and Zhang, Q and Kolls, JK and Srivastava, A and Lundgren, A and Forte, S and Thompson, CM and Harney, KF and Anderson, PW and Lipsitch, M and Malley, R (2008) Interleukin-17A mediates acquired immunity to pneumococcal colonization. PLoS Pathogens, 4 (9). ISSN 1553-7366

Chen, ZH and Kim, HP and Sciurba, FC and Lee, SJ and Feghali-Bostwick, C and Stolz, DB and Dhir, R and Landreneau, RJ and Schuchert, MJ and Yousem, SA and Nakahira, K and Pilewski, JM and Lee, JS and Zhang, Y and Ryter, SW and Choi, AMK (2008) Egr-1 regulates autophagy in cigarette smoke-induced chronic obstructive pulmonary disease. PLoS ONE, 3 (10).

Camacho, CJ (2008) Quantitative modeling of currents from a voltage gated ion channel undergoing fast inactivation. PLoS ONE, 3 (10).

Vazquez, A and De Menezes, MA and Barabási, AL and Oltvai, ZN (2008) Impact of limited solvent capacity on metabolic rate, enzyme activities, and metabolite concentrations of S. cerevisiae glycolysis. PLoS Computational Biology, 4 (10). ISSN 1553-734X

Kuller, LH and Tracy, R and Belloso, W and De Wit, S and Drummond, F and Lane, HC and Ledergerber, B and Lundgren, J and Neuhaus, J and Nixon, D and Paton, NI and Neaton, JD (2008) Inflammatory and coagulation biomarkers and mortality in patients with HIV infection. PLoS Medicine, 5 (10). 1496 - 1508. ISSN 1549-1277

Ding, Y and Larson, G and Rivas, G and Lundberg, C and Geller, L and Ouyang, C and Weitzel, J and Archambeau, J and Slater, J and Daly, MB and Benson, AB and Kirkwood, JM and O'Dwyer, PJ and Sutphen, R and Stewart, JA and Johnson, D and Nordborg, M and Krontiris, TG (2008) Strong signature of natural selection within an FHIT intron implicated in prostate cancer risk. PLoS ONE, 3 (10).

Etheridge, SL and Ray, S and Li, S and Hamblet, NS and Lijam, N and Tsang, M and Greer, J and Kardos, N and Wang, J and Sussman, DJ and Chen, P and Wynshaw-Boris, A (2008) Murine dishevelled 3 functions in redundant pathways with dishevelled 1 and 2 in normal cardiac outflow tract, cochlea, and neural tube development. PLoS Genetics, 4 (11). ISSN 1553-7390

Chowdhury, R and Bois, PRJ and Feingold, E and Sherman, SL and Cheung, VG (2009) Genetic analysis of variation in human meiotic recombination. PLoS Genetics, 5 (9). ISSN 1553-7390

Camacho, CJ and Katsumata, Y and Ascherman, DP (2008) Structural and thermodynamic approach to peptide immunogenicity. PLoS Computational Biology, 4 (11). ISSN 1553-734X

Baratt, Arie and Arkhipov, Sergey N. and Maly, Ivan V. (2008) An Experimental and Computational Study of Effects of Microtubule Stabilization on T-Cell Polarity. PLoS ONE, 3 (12). e3861 - e3861.

Epstein, Joshua M. and Parker, Jon and Cummings, Derek and Hammond, Ross A. (2008) Coupled Contagion Dynamics of Fear and Disease: Mathematical and Computational Explorations. PLoS ONE, 3 (12). e3955 - e3955.

Marinelli, LJ and Piuri, M and Swigoňová, Z and Balachandran, A and Oldfield, LM and van Kessel, JC and Hatfull, GF (2008) BRED: A simple and powerful tool for constructing mutant and recombinant bacteriophage genomes. PLoS ONE, 3 (12).

Kim, M and Maly, IV (2009) Deterministic mechanical model of T-killer cell polarization reproduces the wandering of aim between simultaneously engaged targets. PLoS Computational Biology, 5 (1). ISSN 1553-734X

Reich, D and Nalls, MA and Kao, WHL and Akylbekova, EL and Tandon, A and Patterson, N and Mullikin, J and Hsueh, WC and Cheng, CY and Coresh, J and Boerwinkle, E and Li, M and Waliszewska, A and Neubauer, J and Li, R and Leak, TS and Ekunwe, L and Files, JC and Hardy, CL and Zmuda, JM and Taylor, HA and Ziv, E and Harris, TB and Wilson, JG (2009) Reduced neutrophil count in people of African descent is due to a regulatory variant in the Duffy antigen receptor for chemokines gene. PLoS Genetics, 5 (1). ISSN 1553-7390

Jakobsdottir, J and Gorin, MB and Conley, YP and Ferrell, RE and Weeks, DE (2009) Interpretation of genetic association studies: Markers with replicated highly significant odds ratios may be poor classifiers. PLoS Genetics, 5 (2). ISSN 1553-7390

Konduru, NV and Tyurina, YY and Feng, W and Basova, LV and Belikova, NA and Bayir, H and Clark, K and Rubin, M and Stolz, D and Vallhov, H and Scheynius, A and Witasp, E and Fadeel, B and Kichambare, PD and Star, A and Kisin, ER and Murray, AR and Shvedova, AA and Kagan, VE (2009) Phosphatidylserine targets single-walled carbon nanotubes to professional phagocytes in vitro and in vivo. PLoS ONE, 4 (2).

Jeong, M and Kwon, YS and Park, SH and Kim, CY and Jeun, SS and Song, KW and Ko, Y and Robbins, PD and Billiar, TR and Kim, BM and Seol, DW (2009) Possible novel therapy for malignant gliomas with secretable trimeric TRAIL. PLoS ONE, 4 (2).

Bianco-Miotto, Tina and Hussey, Damian J. and Day, Tanya K. and O'Keefe, Denise S. and Dobrovic, Alexander (2009) DNA Methylation of the ABO Promoter Underlies Loss of ABO Allelic Expression in a Significant Proportion of Leukemic Patients. PLoS ONE, 4 (3). e4788 - e4788.

Opresko, PL and Sowd, G and Wang, H (2009) The Werner syndrome helicase/exonuclease processes mobile D-loops through branch migration and degradation. PLoS ONE, 4 (3).

Piuri, M and Jacobs, WR and Hatfull, GF (2009) Fluoromycobacteriophages for rapid, specific, and sensitive antibiotic susceptibility testing of Mycobacterium tuberculosis. PLoS ONE, 4 (3).

Wang, Z and Shufesky, WJ and Montecalvo, A and Divito, SJ and Larregina, AT and Morelli, AE (2009) In situ-targeting of dendritic cells with donor-derived apoptopic cells restrains indirect allorecognition and ameliorates allograft vasculopathy. PLoS ONE, 4 (3).

Yang, Z and Májek, P and Bahar, I (2009) Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL. PLoS Computational Biology, 5 (4). ISSN 1553-734X

Barua, D and Faeder, JR and Haugh, JM (2009) A Bipolar Clamp Mechanism for Activation of Jak-Family Protein Tyrosine Kinases. PLoS Computational Biology, 5 (4). ISSN 1553-734X

Corcoran, DL and Pandit, KV and Gordon, B and Bhattacharjee, A and Kaminski, N and Benos, PV (2009) Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data. PLoS ONE, 4 (4).

Ly, C and Doiron, B (2009) Divisive Gain Modulation with Dynamic Stimuli in Integrate-and-Fire Neurons. PLoS Computational Biology, 5 (4). ISSN 1553-734X

Brown, KN and Wijewardana, V and Liu, X and Barratt-Boyes, SM (2009) Rapid influx and death of plasmacytoid dendritic cells in lymph nodes mediate depletion in acute simian immunodeficiency virus infection. PLoS Pathogens, 5 (5). ISSN 1553-7366

Deguchi, A and Miyamoto, K and Kuwahara, T and Miki, Y and Kaneko, I and Li, J and McClane, BA and Akimoto, S (2009) Genetic characterization of type A enterotoxigenic Clostridium perfringens strains. PLoS ONE, 4 (5).

Cheng, CY and Kao, WHL and Patterson, N and Tandon, A and Haiman, CA and Harris, TB and Xing, C and John, EM and Ambrosone, CB and Brancati, FL and Coresh, J and Press, MF and Parekh, RS and Klag, MJ and Meoni, LA and Hsueh, WC and Fejerman, L and Pawlikowska, L and Freedman, ML and Jandorf, LH and Bandera, EV and Ciupak, GL and Nalls, MA and Akylbekova, EL and Orwoll, ES and Leak, TS and Miljkovic, I and Li, R and Ursin, G and Bernstein, L and Ardlie, K and Taylor, HA and Boerwinckle, E and Zmuda, JM and Henderson, BE and Wilson, JG and Reich, D (2009) Admixture mapping of 15,280 African Americans identifies obesity susceptibility loci on chromosomes 5 and X. PLoS Genetics, 5 (5). ISSN 1553-7390

di Giuseppe, M and Gambelli, F and Hoyle, GW and Lungarella, G and Studer, SM and Richards, T and Yousem, S and McCurry, K and Dauber, J and Kaminski, N and Leikauf, G and Ortiz, LA (2009) Systemic inhibition of NF-κB activation protects from silicosis. PLoS ONE, 4 (5).

Wognum, S and Lagoa, CE and Nagatomi, J and Sacks, MS and Vodovotz, Y (2009) An exploratory pathways analysis of temporal changes induced by spinal cord injury in the Rat bladder wall: Insights on remodeling and inflammation. PLoS ONE, 4 (6).

Wise, JL and Crout, RJ and McNeil, DW and Weyant, RJ and Marazita, ML and Wenger, SL (2009) Cryptic subtelomeric rearrangements and X chromosome mosaicism: A study of 565 apparently normal individuals with fluorescent in situ hybridization. PLoS ONE, 4 (6).

Strauss, Laura and Czystowska, Malgorzata and Szajnik, Marta and Mandapathil, Magis and Whiteside, Theresa L (2009) Differential Responses of Human Regulatory T Cells (Treg) and Effector T Cells to Rapamycin. PLoS ONE, 4 (6). e5994 - e5994.

Wise, JL and Crout, RJ and Mcneil, DW and Weyant, RJ and Marazita, ML and Wenger, SL (2009) Human telomere length correlates to the size of the associated chromosome arm. PLoS ONE, 4 (6).

Ross, TM and Mahmood, K and Crevar, CJ and Schneider-Ohrum, K and Heaton, PM and Bright, RA (2009) A trivalent virus-like particle vaccine elicits protective immune responses against seasonal influenza strains in mice and ferrets. PLoS ONE, 4 (6).

Bucan, M and Abrahams, BS and Wang, K and Glessner, JT and Herman, EI and Sonnenblick, LI and Alvarez Retuerto, AI and Imielinski, M and Hadley, D and Bradfield, JP and Kim, C and Gidaya, NB and Lindquist, I and Hutman, T and Sigman, M and Kustanovich, V and Lajonchere, CM and Singleton, A and Kim, J and Wassink, TH and McMahon, WM and Owley, T and Sweeney, JA and Coon, H and Nurnberger, JI and Li, M and Cantor, RM and Minshew, NJ and Sutcliffe, JS and Cook, EH and Dawson, G and Buxbaum, JD and Grant, SFA and Schellenberg, GD and Geschwind, DH and Hakonarson, H (2009) Genome-wide analyses of exonic copy number variants in a family-based study point to novel autism susceptibility genes. PLoS Genetics, 5 (6). ISSN 1553-7390

Guo, S and Yan, G and Ma, D and Bai, X and Jiang, Y and Shen, X and Li, S (2009) A MAP kinase dependent feedback mechanism controls Rho1 GTPase and actin distribution in yeast. PLoS ONE, 4 (6).

Vidal, JE and Chen, J and Li, J and McClane, BA (2009) Use of an EZ-Tn5-based random mutagenesis system to identify a novel toxin regulatory locus in Clostridium perfringens strain 13. PLoS ONE, 4 (7).

Li, J and Paredes-Sabja, D and Sarker, MR and McClane, BA (2009) Further characterization of Clostridium perfringens small acid soluble protein-4 (Ssp4) properties and expression. PLoS ONE, 4 (7).

George, MP and Kannass, M and Huang, L and Sciurba, FC and Morris, A (2009) Respiratory symptoms and airway obstruction in HIV-infected subjects in the HAART era. PLoS ONE, 4 (7).

Raghavachari, N and Xu, X and Munson, PJ and Gladwin, MT (2009) Characterization of whole blood gene expression profiles as a sequel to globin mRNA reduction in patients with sickle cell disease. PLoS ONE, 4 (8).

Verduzco-Flores, S and Bodner, M and Ermentrout, B and Fuster, JM and Zhou, Y (2009) Working memory cells' behavior may be explained by cross-regional networks with synaptic facilitation. PLoS ONE, 4 (8).

Yoshizawa, K and Jelezcova, E and Brown, AR and Foley, JF and Nyska, A and Cui, X and Hofseth, LJ and Maronpot, RM and Wilson, SH and Sepulveda, AR and Sobol, RW (2009) Gastrointestinal hyperplasia with altered expression of DNA polymerase β. PLoS ONE, 4 (8).

Jin, J and Sturgeon, T and Weisz, OA and Mothes, W and Montelaro, RC (2009) HIV-1 matrix dependent membrane targeting is regulated by Gag mRNA trafficking. PLoS ONE, 4 (8).

Dembowski, JA and Grabowski, PJ (2009) The CUGBP2 splicing factor regulates an ensemble of branchpoints from perimeter binding sites with implications for autoregulation. PLoS Genetics, 5 (8). ISSN 1553-7390

Segal, BH and Han, W and Bushey, JJ and Joo, M and Bhatti, Z and Feminella, J and Dennis, CG and Vethanayagam, RR and Yull, FE and Capitano, M and Wallace, PK and Minderman, H and Christman, JW and Sporn, MB and Chan, J and Vinh, DC and Holland, SM and Romani, LR and Gaffen, SL and Freeman, ML and Blackwell, TS (2010) NADPH oxidase limits innate immune responses in the lungs in mice. PLoS ONE, 5 (3).

Ramsgaard, L and Englert, JM and Tobolewski, J and Tomai, L and Fattman, CL and Leme, AS and Kaynar, AM and Shapiro, SD and Enghild, JJ and Oury, TD (2010) The role of the receptor for advanced glycation end-products in a murine model of silicosis. PLoS ONE, 5 (3).

Khurana, S and Verma, S and Verma, N and Crevar, CJ and Carter, DM and Manischewitz, J and King, LR and Ross, TM and Golding, H (2010) Properly folded bacterially expressed H1N1 hemagglutinin globular head and ectodomain vaccines protect ferrets against H1N1 pandemic influenza virus. PLoS ONE, 5 (7).

Punjabi, NM and Caffo, BS and Goodwin, JL and Gottlieb, DJ and Newman, AB and O'Connor, GT and Rapoport, DM and Redline, S and Resnick, HE and Robbins, JA and Shahar, E and Unruh, ML and Samet, JM (2009) Sleep-disordered breathing and mortality: A prospective cohort study. PLoS Medicine, 6 (8). ISSN 1549-1277

Brumme, ZL and John, M and Carlson, JM and Brumme, CJ and Chan, D and Brockman, MA and Swenson, LC and Tao, I and Szeto, S and Rosato, P and Sela, J and Kadie, CM and Frahm, N and Brander, C and Haas, DW and Riddler, SA and Haubrich, R and Walker, BD and Harrigan, PR and Heckerman, D and Mallal, S (2009) HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. PLoS ONE, 4 (8).

Bon, JM and Leader, JK and Weissfeld, JL and Coxson, HO and Zheng, B and Branch, RA and Kondragunta, V and Lee, JS and Zhang, Y and Choi, AMK and Lokshin, AE and Kaminski, N and Gur, D and Sciurba, FC (2009) The influence of radiographic phenotype and smoking status on peripheral blood biomarker patterns in chronic obstructive pulmonary disease. PLoS ONE, 4 (8).

Cummings, DAT and Iamsirithaworn, S and Lessler, JT and McDermott, A and Prasanthong, R and Nisalak, A and Jarman, RG and Burke, DS and Gibbons, RV (2009) The impact of the demographic transition on dengue in Thailand: Insights from a statistical analysis and mathematical modeling. PLoS Medicine, 6 (9). ISSN 1549-1277

Chen, X and Sun, C and Chen, Q and O'Neill, FA and Walsh, D and Fanous, AH and Chowdari, KV and Nimgaonkar, VL and Scott, A and Schwab, SG and Wildenauer, DB and Che, R and Tang, W and Shi, Y and He, L and Luo, XJ and Su, B and Edwards, TL and Zhao, Z and Kendler, KS (2009) Apoptotic engulfment pathway and schizophrenia. PLoS ONE, 4 (9).

Herbeck, JT and Gottlieb, GS and Wong, K and Detels, R and Phair, JP and Rinaldo, CR and Jacobson, LP and Margolick, JB and Mullins, JI (2009) Fidelity of SNP array genotyping using Epstein Barr virus-transformed B-lymphocyte cell lines: Implications for genome-wide association studies. PLoS ONE, 4 (9).

Lezon, TR and Sali, A and Bahar, I (2009) Global motions of the nuclear pore complex: Insights from elastic network models. PLoS Computational Biology, 5 (9). ISSN 1553-734X

Traub, LM (2009) Clathrin couture: Fashioning distinctive membrane coats at the cell surface. PLoS Biology, 7 (9). ISSN 1544-9173

Pastrana, DV and Tolstov, YL and Becker, JC and Moore, PS and Chang, Y and Buck, CB (2009) Quantitation of human seroresponsiveness to Merkel cell polyomavirus. PLoS Pathogens, 5 (9). ISSN 1553-7366

Goldstein, J and Morris, WE and Loidi, CF and Tironi-Farinatti, C and McClane, BA and Uzal, FA and Fernandez Miyakawa, ME (2009) Clostridium perfringens epsilon toxin increases the small intestinal permeability in mice and rats. PLoS ONE, 4 (9).

Montesinos, A and Tonsor, SJ and Alonso-Blanco, C and Picó, FX (2009) Demographic and genetic patterns of variation among populations of Arabidopsis thaliana from contrasting native environments. PLoS ONE, 4 (9).

Ghedin, E and Hailemariam, T and DePasse, JV and Zhang, X and Oksov, Y and Unnasch, TR and Lustigman, S (2009) Brugia malayi gene expression in response to the targeting of the Wolbachia endosymbiont by tetracycline treatment. PLoS Neglected Tropical Diseases, 3 (10).

Venkatachari, NJ and Alber, S and Watkins, SC and Ayyavoo, V (2009) HIV-1 infection of DC: Evidence for the acquisition of virus particles from infected T cells by antigen uptake mechanism. PLoS ONE, 4 (10).

Ernst, J and Ghanem, L and Bar-Joseph, Z and McNamara, M and Brown, J and Steinman, RA (2009) IL-3 and oncogenic Abl regulate the myeloblast transcriptome by altering mRNA stability. PLoS ONE, 4 (10).

Ermentrout, B and Simons, DJ and Land, PW (2009) Subbarrel patterns in somatosensory cortical barrels can emerge from local dynamic instabilities. PLoS Computational Biology, 5 (10). ISSN 1553-734X

Yu, S and Franceschi, RT and Luo, M and Fan, J and Jiang, D and Cao, H and Kwon, TG and Lai, Y and Zhang, J and Patrene, K and Hankenson, K and Roodman, GD and Xiao, G (2009) Critical role of activating transcription factor 4 in the anabolic actions of parathyroid hormone in bone. PLoS ONE, 4 (10).

Brindley, PJ and Mitreva, M and Ghedin, E and Lustigman, S (2009) Helminth genomics: The implications for human health. PLoS Neglected Tropical Diseases, 3 (10).

Sharlow, ER and Close, D and Shun, T and Leimgruber, S and Reed, R and Mustata, G and Wipf, P and Johnson, J and O'Neil, M and Grögl, M and Magill, AJ and Lazo, JS (2009) Identification of potent chemotypes targeting Leishmania major using a high-throughput, low-stringency, computationally enhanced, small molecule screen. PLoS Neglected Tropical Diseases, 3 (11).

Nascimento, EJM and Braga-Neto, U and Calzavara-Silva, CE and Gomes, ALV and Abath, FGC and Brito, CAA and Cordeiro, MT and Silva, AM and Magalhãnes, C and Andrade, R and Gil, LHVG and Marques, ETA (2009) Gene expression profiling during early acute febrile stage of dengue infection can predict the disease outcome. PLoS ONE, 4 (11).

Niu, X and Nouraie, M and Campbell, A and Rana, S and Minniti, CP and Sable, C and Darbari, D and Dham, N and Reading, NS and Prchal, JT and Kato, GJ and Gladwin, MT and Castro, OL and Gordeuk, VR (2009) Angiogenic and inflammatory markers of cardiopulmonary changes in children and adolescents with sickle cell disease. PLoS ONE, 4 (11).

Edeling, MA and Sanker, S and Shima, T and Umasankar, PK and Höning, S and Kim, HY and Davidson, LA and Watkins, SC and Tsang, M and Owen, DJ and Traub, LM (2009) Structural requirements for PACSIN/syndapin operation during zebrafish embryonic notochord development. PLoS ONE, 4 (12).

Glazer, CA and Smith, IM and Ochs, MF and Begum, S and Westra, W and Chang, SS and Sun, W and Bhan, S and Khan, Z and Ahrendt, S and Califano, JA (2009) Integrative discovery of epigenetically derepressed cancer testis antigens in NSCLC. PLoS ONE, 4 (12).

Ekins, Sean and Kortagere, Sandhya and Iyer, Manisha and Reschly, Erica J. and Lill, Markus A. and Redinbo, Matthew R. and Krasowski, Matthew D. (2009) Challenges Predicting Ligand-Receptor Interactions of Promiscuous Proteins: The Nuclear Receptor PXR. PLoS Computational Biology, 5 (12). e1000594 - e1000594.

Namas, R and Ghuma, A and Torres, A and Polanco, P and Gomez, H and Barclay, D and Gordon, L and Zenker, S and Kim, HK and Hermus, L and Zamora, R and Rosengart, MR and Clermont, G and Peitzman, A and Billiar, TR and Ochoa, J and Pinsky, MR and Puyana, JC and Vodovotz, Y (2009) An adequately robust early TNF-α response is a hallmark of survival following trauma/hemorrhage. PLoS ONE, 4 (12).

Selivanov, VA and Votyakova, TV and Zeak, JA and Trucco, M and Roca, J and Cascante, M (2009) Bistability of mitochondrial respiration underlies paradoxical reactive oxygen species generation induced by anoxia. PLoS Computational Biology, 5 (12). ISSN 1553-734X

Fellay, J and Ge, D and Shianna, KV and Colombo, S and Ledergerber, B and Cirulli, ET and Urban, TJ and Zhang, K and Gumbs, CE and Smith, JP and Castagna, A and Cozzi-Lepri, A and De Luca, A and Easterbrook, P and Günthard, HF and Mallal, S and Mussini, C and Dalmau, J and Martinez-Picado, J and Miro, JM and Obel, N and Wolinsky, SM and Martinson, JJ and Detels, R and Margolick, JB and Jacobson, LP and Descombes, P and Antonarakis, SE and Beckmann, JS and O'Brien, SJ and Letvin, NL and McMichael, AJ and Haynes, BF and Carrington, M and Feng, S and Telenti, A and Goldstein, DB (2009) Common genetic variation and the control of HIV-1 in humans. PLoS Genetics, 5 (12). ISSN 1553-7390

Haugen, AC and Di Prospero, NA and Parker, JS and Fannin, RD and Chou, J and Meyer, JN and Halweg, C and Collins, JB and Durr, A and Fischbeck, K and Van Houten, B (2010) Altered gene expression and DNA damage in peripheral blood cells from Friedreich's ataxia patients: Cellular model of pathology. PLoS Genetics, 6 (1). ISSN 1553-7390

Tan, PT and Heiny, AT and Miotto, O and Salmon, J and Marques, ETA and Lemonnier, F and August, JT (2010) Conservation and diversity of influenza A H1N1 HLA-restricted T cell epitope candidates for epitope-based vaccines. PLoS ONE, 5 (1).

Perry, S and De Jong, BC and Solnick, JV and De La Luz Sanchez, M and Yang, S and Lin, PL and Hansen, LM and Talat, N and Hill, PC and Hussain, R and Adegbola, RA and Flynn, JA and Canfield, D and Parsonnet, J (2010) Infection with Helicobacter pylori is associated with protection against tuberculosis. PLoS ONE, 5 (1).

Gilani, SR and Vuga, LJ and Lindell, KO and Gibson, KF and Xue, J and Kaminski, N and Valentine, VG and Lindsay, EK and George, MP and Steele, C and Duncan, SR (2010) CD28 down-regulation on circulating CD4 T-cells is associated with poor prognoses of patients with idiopathic pulmonary fibrosis. PLoS ONE, 5 (1).

Donlin, MJ and Cannon, NA and Aurora, R and Li, J and Wahed, AS and Di Bisceglie, AM and Tavis, JE (2010) Contribution of genome-wide HCV genetic differences to outcome of interferon-based therapy in Caucasian American and African American patients. PLoS ONE, 5 (2).

Jenkins, R and Kydd, R and Mullen, P and Thomson, K and Sculley, J and Kuper, S and Carroll, J and Gureje, O and Hatcher, S and Brownie, S and Carroll, C and Hollins, S and Wong, ML (2010) International migration of doctors, and its impact on availability of psychiatrists in low and middle income countries. PLoS ONE, 5 (2).

Touboul, Jonathan and Destexhe, Alain (2010) Can Power-Law Scaling and Neuronal Avalanches Arise from Stochastic Dynamics? PLoS ONE, 5 (2). e8982 - e8982.

Ghosh, HS and McBurney, M and Robbins, PD (2010) SIRT1 negatively regulates the mammalian target of rapamycin. PLoS ONE, 5 (2).

Braithwaite, RS and Omokaro, C and Justice, AC and Nucifora, K and Roberts, MS (2010) Can broader diffusion of value-based insurance design increase benefits from us health care without increasing costs? Evidence from a computer simulation model. PLoS Medicine, 7 (2). ISSN 1549-1277

Schwartz, JH and Houghton, F and Macchiarelli, R and Bondioli, L (2010) Skeletal remains from punic carthage do not support systematic sacrifice of infants. PLoS ONE, 5 (2).

Marella, S and Ermentrout, B (2010) Amplification of asynchronous inhibition-mediated synchronization by feedback in recurrent networks. PLoS Computational Biology, 6 (2). ISSN 1553-734X

Rohan, LC and Moncla, BJ and Kunjara Na Ayudhya, RP and Cost, M and Huang, Y and Gai, F and Billitto, N and Lynam, JD and Pryke, K and Graebing, P and Hopkins, N and Rooney, JF and Friend, D and Dezzutti, CS (2010) In vitro and ex vivo testing of tenofovir shows it is effective as an HIV-1 microbicide. PLoS ONE, 5 (2).

Yao, JK and Dougherty, GG and Reddy, RD and Keshavan, MS and Montrose, DM and Matson, WR and McEvoy, J and Kaddurah-Daouk, R (2010) Homeostatic imbalance of purine catabolism in first-episode neuroleptic-naïve patients with schizophrenia. PLoS ONE, 5 (3).

Ahmad, A and Enzlin, JH and Bhagwat, NR and Wijgers, N and Raams, A and Appledoorn, E and Theil, AF and Hoeijmakers, JHJ and Vermeulen, W and Jaspers, NGJ and Schärer, OD and Niedernhofer, LJ (2010) Mislocalization of XPF-ERCC1 nuclease contributes to reduced DNA repair in XP-F patients. PLoS Genetics, 6 (3). ISSN 1553-7390

Ng, SK and Lo, WS and Pun, FW and Zhao, C and Yu, Z and Chen, J and Tong, KL and Xu, Z and Tsang, SY and Yang, Q and Yu, W and Nimgaonkar, V and Stöber, G and Harano, M and Xue, H (2010) A recombination hotspot in a schizophrenia-associated region of GABRB2. PLoS ONE, 5 (3).

Clark, DB and Moss, HB (2010) Providing alcohol-related screening and brief interventions to adolescents through health care systems: Obstacles and solutions. PLoS Medicine, 7 (3). 1 - 4. ISSN 1549-1277

Diedrich, CR and Mattila, JT and Klein, E and Janssen, C and Phuah, J and Sturgeon, TJ and Montelaro, RC and Lin, PL and Flynn, JAL (2010) Reactivation of latent tuberculosis in cynomolgus macaques infected with SIV is associated with early peripheral T cell depletion and not virus load. PLoS ONE, 5 (3).

Jiang, S and Lee, BC and Fu, Y and Avraham, S and Lim, B and Avraham, HK (2010) Reconstitution of mammary epithelial morphogenesis by murine embryonic stem cells undergoing hematopoietic stem cell differentiation. PLoS ONE, 5 (3).

D'Aiuto, L and Marzulli, M and Naga Mohan, K and Borowczyk, E and Saporiti, F and VanDemark, A and Chaillet, JR (2010) Dissection of structure and function of the N-terminal domain of mouse DNMT1 using regional frame-shift mutagenesis. PLoS ONE, 5 (3).

Macatangay, BJC and Szajnik, ME and Whiteside, TL and Riddler, SA and Rinaldo, CR (2010) Regulatory T cell suppression of gag-specific CD8⁺ T cell polyfunctional response after therapeutic vaccination of HIV-1-infected patients on ART. PLoS ONE, 5 (3).

Zhou, H and Huang, C and Chen, H and Wang, D and Landel, CP and Xia, PY and Bowser, R and Liu, YJ and Xia, XG (2010) Transgenic rat model of neurodegeneration caused by mutation in the TDP gene. PLoS Genetics, 6 (3). ISSN 1553-7390

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Zhai, G and Teumer, A and Stolk, L and Perry, JRB and Vandenput, L and Coviello, AD and Koster, A and Bell, JT and Bhasin, S and Eriksson, J and Eriksson, A and Ernst, F and Ferrucci, L and Frayling, TM and Glass, D and Grundberg, E and Haring, R and HedmanÅ, AK and Hofman, A and Kiel, DP and Kroemer, HK and Liu, Y and Lunetta, KL and Maggio, M and Lorentzon, M and Mangino, M and Melzer, D and Miljkovic, I and Nica, A and Penninx, BWJH and Vasan, RS and Rivadeneira, F and Small, KS and Soranzo, N and Uitterlinden, AG and Völzke, H and Wilson, SG and Xi, L and Zhuang, WV and Harris, TB and Murabito, JM and Ohlsson, C and Murray, A and de Jong, FH and Spector, TD and Wallaschofski, H (2011) Eight common genetic variants associated with serum dheas levels suggest a key role in ageing mechanisms. PLoS Genetics, 7 (4). ISSN 1553-7390

Cirio, MC and Hui, Z and Haldin, CE and Cosentino, CC and Stuckenholz, C and Chen, X and Hong, SK and Dawid, IB and Hukriede, NA (2011) Lhx1 is required for specification of the renal progenitor cell field. PLoS ONE, 6 (4).

Abbas, UL and Hood, G and Wetzel, AW and Mellors, JW (2011) Factors influencing the emergence and spread of HIV drug resistance arising from rollout of antiretroviral pre-exposure prophylaxis (PrEP). PLoS ONE, 6 (4).

Khatana, SAM and Kane, J and Taveira, TH and Bauer, MS and Wu, WC (2011) Monitoring and prevalence rates of metabolic syndrome in military veterans with serious mental illness. PLoS ONE, 6 (4).

Vazquez, A and Oltvai, ZN (2011) Molecular crowding defines a common origin for the warburg effect in proliferating cells and the lactate threshold in muscle physiology. PLoS ONE, 6 (4).

Comhair, SAA and Gaston, BM and Ricci, KS and Hammel, J and Dweik, RA and Teague, WG and Meyers, D and Ampleford, EJ and Bleecker, ER and Busse, WW and Calhoun, WJ and Castro, M and Chung, KF and Curran-Everett, D and Israel, E and Jarjour, WN and Moore, W and Peters, SP and Wenzel, S and Hazen, SL and Erzurum, SC (2011) Detrimental effects of environmental tobacco smoke in relation to asthma severity. PLoS ONE, 6 (5).

Latzka, Julia and Gaier, Sonja and Hofstetter, Gerlinde and Balazs, Nina and Smole, Ursula and Ferrone, Soldano and Scheiner, Otto and Breiteneder, Heimo and Pehamberger, Hubert and Wagner, Stefan (2011) Specificity of mimotope-induced anti-high molecular weight-melanoma associated antigen (HMW-MAA) antibodies does not ensure biological activity. PLoS One, 6 (5). e19383 - ?.

Mi, Q and Constantine, G and Ziraldo, C and Solovyev, A and Torres, A and Namas, R and Bentley, T and Billiar, TR and Zamora, R and Puyana, JC and Vodovotz, Y (2011) A dynamic view of trauma/hemorrhage-induced inflammation in mice: Principal drivers and networks. PLoS ONE, 6 (5).

Prescott, J and Kraft, P and Chasman, DI and Savage, SA and Mirabello, L and Berndt, SI and Weissfeld, JL and Han, J and Hayes, RB and Chanock, SJ and Hunter, DJ and de Vivo, I (2011) Genome-wide association study of relative telomere length. PLoS ONE, 6 (5).

O'Donovan, A and Pantell, MS and Puterman, E and Dhabhar, FS and Blackburn, EH and Yaffe, K and Cawthon, RM and Opresko, PL and Hsueh, WC and Satterfield, S and Newman, AB and Ayonayon, HN and Rubin, SM and Harris, TB and Epel, ES (2011) Cumulative inflammatory load is associated with short leukocyte telomere length in the health, aging and body composition study. PLoS ONE, 6 (5).

Bell, SL and Chiang, AN and Brodsky, JL (2011) Expression of a malarial Hsp70 improves defects in chaperone-dependent activities in ssa1 mutant yeast. PLoS ONE, 6 (5).

Zhang, Y and Handley, D and Kaplan, T and Yu, H and Bais, AS and Richards, T and Pandit, KV and Zeng, Q and Benos, PV and Friedman, N and Eickelberg, O and Kaminski, N (2011) High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells. PLoS ONE, 6 (5).

Ramsgaard, L and Englert, JM and Manni, ML and Milutinovic, PS and Gefter, J and Tobolewski, J and Crum, L and Coudriet, GM and Piganelli, J and Zamora, R and Vodovotz, Y and Enghild, JJ and Oury, TD (2011) Lack of the receptor for advanced glycation end-products attenuates e. coli pneumonia in mice. PLoS ONE, 6 (5).

Si, Y and Liu, X and Cheng, M and Wang, M and Gong, Q and Yang, Y and Wang, T and Yang, W (2011) Growth differentiation factor 15 is induced by hepatitis C virus infection and regulates hepatocellular carcinoma-related genes. PLoS ONE, 6 (5).

Chen, K and Pociask, DA and McAleer, JP and Chan, YR and Alcorn, JF and Kreindler, JL and Keyser, MR and Shapiro, SD and Houghton, AMG and Kolls, JK and Zheng, M (2011) IL-17RA is required for CCL2 expression, macrophage recruitment, and emphysema in response to cigarette smoke. PLoS ONE, 6 (5).

Miyamoto, K and Yumine, N and Mimura, K and Nagahama, M and Li, J and McClane, BA and Akimoto, S (2011) Identification of novel clostridium perfringens type E strains that carry an iota toxin plasmid with a functional enterotoxin gene. PLoS ONE, 6 (5).

Epstein, Joshua M. and Pankajakshan, Ramesh and Hammond, Ross A. (2011) Combining Computational Fluid Dynamics and Agent-Based Modeling: A New Approach to Evacuation Planning. PLoS ONE, 6 (5). e20139 - e20139.

Mantell, BS and Stefanovic-Racic, M and Yang, X and Dedousis, N and Sipula, IJ and O'Doherty, RM (2011) mice lacking NKT cells but with a complete complement of CD8⁺ T-Cells are not protected against the metabolic abnormalities of diet-induced obesity. PLoS ONE, 6 (6).

Mangia, Cristina Malzoni Ferreira and Kissoon, Niranjan and Branchini, Otavio Augusto and Andrade, Maria Cristina and Kopelman, Benjamin Israel and Carcillo, Joe (2011) Bacterial Sepsis in Brazilian Children: A Trend Analysis from 1992 to 2006. PLoS ONE, 6 (6). e14817 - e14817.

Sanghera, DK and Been, LF and Ralhan, S and Wander, GS and Mehra, NK and Singh, JR and Ferrell, RE and Kamboh, MI and Aston, CE (2011) Genome-wide linkage scan to identify loci associated with type 2 diabetes and blood lipid phenotypes in the sikh diabetes study. PLoS ONE, 6 (6).

Varum, S and Rodrigues, AS and Moura, MB and Momcilovic, O and Easley IV, CA and Ramalho-Santos, J and van Houten, B and Schatten, G (2011) Energy metabolism in human pluripotent stem cells and their differentiated counterparts. PLoS ONE, 6 (6).

Biswas, N and Liu, S and Ronni, T and Aussenberg, SE and Liu, W and Fujita, T and Wang, T (2011) The ubiquitin-like protein PLIC-1 or ubiquilin 1 inhibits TLR3-Trif signaling. PLoS ONE, 6 (6).

Sacchi, CT and Fukasawa, LO and Gonçalves, MG and Salgado, MM and Shutt, KA and Carvalhanas, TR and Ribeiro, AF and Kemp, B and Gorla, MCO and Albernaz, RK and Marques, EGL and Cruciano, A and Waldman, EA and Brandileone, MCC and Harrison, LH and São Paulo RT-PCR Surveillance Project Team, (2011) Incorporation of real-time PCR into routine Public Health Surveillance of Culture Negative Bacterial meningitis in São paulo, Brazil. PLoS ONE, 6 (6).

Broen, Kelly and Greupink-Draaisma, Annelies and Woestenenk, Rob and Schaap, Nicolaas and Brickner, Anthony G and Dolstra, Harry (2011) Concurrent detection of circulating minor histocompatibility antigen-specific CD8+ T cells in SCT recipients by combinatorial encoding MHC multimers. PLoS One, 6 (6). e21266 - ?.

Ping, J and Keleta, L and Forbes, NE and Dankar, S and Stecho, W and Tyler, S and Zhou, Y and Babiuk, L and Weingartl, H and Halpin, RA and Boyne, A and Bera, J and Hostetler, J and Fedorova, NB and Proudfoot, K and Katzel, DA and Stockwell, TB and Ghedin, E and Spiro, DJ and Brown, EG (2011) Genomic and protein structural maps of adaptive evolution of human influenza a virus to increased virulence in the mouse. PLoS ONE, 6 (6).

Robertson, SL and Li, J and Uzal, FA and McClane, BA (2011) Evidence for a prepore stage in the action of clostridium perfringens epsilon toxin. PLoS ONE, 6 (7).

Zinman, G and Brower-Sinning, R and Emeche, CH and Ernst, J and Huang, GTW and Mahony, S and Myers, AJ and O'Dee, DM and Flynn, JAL and Nau, GJ and Ross, TM and Salter, RD and Benos, PV and Bar Joseph, Z and Morel, PA (2011) Large scale comparison of innate responses to viral and bacterial pathogens in mouse and macaque. PLoS ONE, 6 (7).

Clermont, G and Kong, L and Weissfeld, LA and Lave, JR and Rubenfeld, GD and Roberts, MS and Connors, AF and Bernard, GR and Thompson, BT and Wheeler, AP and Angus, DC (2011) The effect of pulmonary artery catheter use on costs and Long-Term outcomes of acute lung injury. PLoS ONE, 6 (7).

Hochbaum, D and Zhang, Y and Stuckenholz, C and Labhart, P and Alexiadis, V and Martin, R and Knölker, HJ and Fisher, AL (2011) DAF-12 regulates a connected network of genes to ensure robust developmental decisions. PLoS Genetics, 7 (7). ISSN 1553-7390

Craig, M and Pennacchia, A and Wright, NR and Chase, HW and Hogarth, L (2011) Evaluation of Un-Medicated, Self-Paced alcohol withdrawal. PLoS ONE, 6 (7).

Yang, C and Kim, SH and Bianco, NR and Robbins, PD (2011) Tumor-derived exosomes confer antigen-specific immunosuppression in a murine delayed-type hypersensitivity model. PLoS ONE, 6 (8).

Pandrea, I and Gaufin, T and Gautam, R and Kristoff, J and Mandell, D and Montefiori, D and Keele, BF and Ribeiro, RM and Veazey, RS and Apetrei, C (2011) Functional cure of sivagm infection in rhesus macaques results in complete recovery of CD4 ⁺T cells and is reverted by CD8 ⁺ cell depletion. PLoS Pathogens, 7 (8). ISSN 1553-7366

Jiang, X and Barmada, MM and Cooper, GF and Becich, MJ (2011) A Bayesian method for evaluating and discovering disease loci associations. PLoS ONE, 6 (8).

Hahm, ER and Moura, MB and Kelley, EE and van Houten, B and Shiva, S and Singh, SV (2011) Withaferin a-induced apoptosis in human breast cancer cells is mediated by reactive oxygen species. PLoS ONE, 6 (8).

Yende, S and D'Angelo, G and Mayr, F and Kellum, JA and Weissfeld, L and Kaynar, AM and Young, T and Irani, K and Angus, DC (2011) Elevated hemostasis markers after pneumonia increases one-year risk of all-cause and cardiovascular deaths. PLoS ONE, 6 (8).

Dezzutti, CS and Hendrix, CW and Marrazzo, JM and Pan, Z and Wang, L and Louissaint, N and Kalyoussef, S and Torres, NM and Hladik, F and Parikh, U and Mellors, J and Hillier, SL and Herold, BC (2011) Performance of swabs, lavage, and diluents to quantify biomarkers of female genital tract soluble mucosal mediators. PLoS ONE, 6 (8).

Sale, MM and Chen, WM and Weeks, DE and Mychaleckyj, JC and Hou, X and Marion, M and Segade, F and Casselbrant, ML and Mandel, EM and Ferrell, RE and Rich, SS and Daly, KA (2011) Evaluation of 15 functional candidate genes for association with chronic otitis media with effusion and/or recurrent otitis media (COME/ROM). PLoS ONE, 6 (8).

Jiang, J and Zheng, X and Xu, X and Zhou, Q and Yan, H and Zhang, X and Lu, B and Wu, C and Ju, J (2011) Prognostic significance of miR-181b and miR-21 in gastric cancer patients treated with S-1/Oxaliplatin or Doxifluridine/Oxaliplatin. PLoS ONE, 6 (8).

Pesonen, AK and Sjöstén, NM and Matthews, KA and Heinonen, K and Martikainen, S and Kajantie, E and Tammelin, T and Eriksson, JG and Strandberg, T and Räikkönen, K (2011) Temporal associations between daytime physical activity and sleep in children. PLoS ONE, 6 (8).

Zhao, J and Yang, TH and Huang, Y and Holme, P (2011) Ranking candidate disease genes from gene expression and protein interaction: A katz-centrality based approach. PLoS ONE, 6 (9).

Myrden, AJB and Kushki, A and Sejdić, E and Guerguerian, AM and Chau, T (2011) A brain-computer interface based on bilateral transcranial Doppler ultrasound. PLoS ONE, 6 (9).

Geller, F and Feenstra, B and Zhang, H and Shaffer, JR and Hansen, T and Esserlind, AL and Boyd, HA and Nohr, EA and Timpson, NJ and Fatemifar, G and Paternoster, L and Evans, DM and Weyant, RJ and Levy, SM and Lathrop, M and Da Smith, G and Murray, JC and Olesen, J and Werge, T and Marazita, ML and Sørensen, TIA and Melbye, M (2011) Genome-wide association study identifies four loci associated with eruption of permanent teeth. PLoS Genetics, 7 (9). ISSN 1553-7390

Doyon, Nicolas and Prescott, Steven A. and Castonguay, Annie and Godin, Antoine G. and Kröger, Helmut and De Koninck, Yves (2011) Efficacy of Synaptic Inhibition Depends on Multiple, Dynamically Interacting Mechanisms Implicated in Chloride Homeostasis. PLoS Computational Biology, 7 (9). e1002149 - e1002149.

Reed, DS and Smith, L and Dunsmore, T and Trichel, A and Ortiz, LA and Cole, KS and Barry, E (2011) Pneumonic tularemia in rabbits resembles the human disease as illustrated by radiographic and hematological changes after infection. PLoS ONE, 6 (9).

Lee, BY and Assi, TM and Rookkapan, K and Wateska, AR and Rajgopal, J and Sornsrivichai, V and Chen, SI and Brown, ST and Welling, J and Norman, BA and Connor, DL and Bailey, RR and Jana, A and van Panhuis, WG and Burke, DS (2011) Maintaining vaccine delivery following the introduction of the rotavirus and pneumococcal vaccines in Thailand. PLoS ONE, 6 (9).

Lavasani, M and Gehrmann, S and Gharaibeh, B and Clark, KA and Kaufmann, RA and Péault, B and Goitz, RJ and Huard, J (2011) Venous graft-derived cells participate in peripheral nerve regeneration. PLoS ONE, 6 (9).

Shephard, F and Adenle, AA and Jacobson, LA and Szewczyk, NJ (2011) Identification and functional clustering of genes regulating muscle protein degradation from amongst the known C. elegans muscle mutants. PLoS ONE, 6 (9).

Anton, PA and Saunders, T and Elliott, J and Khanukhova, E and Dennis, R and Adler, A and Cortina, G and Tanner, K and Boscardin, J and Cumberland, WG and Zhou, Y and Ventuneac, A and Carballo-Diéguez, A and Rabe, L and McCormick, T and Gabelnick, H and Mauck, C and McGowan, I (2011) First Phase 1 Double-Blind, Placebo-Controlled, randomized rectal microbicide trial using UC781 gel with a novel index of ex vivo efficacy. PLoS ONE, 6 (9).

Rule, M and Stoffregen, M and Ermentrout, B (2011) A model for the origin and properties of flicker-induced geometric phosphenes. PLoS Computational Biology, 7 (9). ISSN 1553-734X

Marcos, E and Crehuet, R and Bahar, I (2011) Changes in dynamics upon oligomerization regulate substrate binding and allostery in amino acid kinase family members. PLoS Computational Biology, 7 (9). ISSN 1553-734X

Hoskins, ER and Hood, BL and Sun, M and Krivak, TC and Edwards, RP and Conrads, TP (2011) Proteomic analysis of ovarian cancer proximal fluids: Validation of elevated peroxiredoxin 1 in patient peripheral circulation. PLoS ONE, 6 (9).

Celotto, AM and Chiu, WK and van Voorhies, W and Palladino, MJ (2011) Modes of metabolic compensation during mitochondrial disease using the drosophila model of ATP6 dysfunction. PLoS ONE, 6 (10).

Sharlow, ER and Wilson, GM and Close, D and Leimgruber, S and Tandon, M and Reed, RB and Shun, TY and Wang, QJ and Wipf, P and Lazo, JS (2011) Discovery of diverse small molecule chemotypes with cell-based PKD1 inhibitory activity. PLoS ONE, 6 (10).

Boichuk, S and Hu, L and Makielski, K and Pandolfi, PP and Gjoerup, OV (2011) Functional connection between Rad51 and PML in homology-directed repair. PLoS ONE, 6 (10).

Ohlsson, C and Wallaschofski, H and Lunetta, KL and Stolk, L and Perry, JRB and Koster, A and Petersen, AK and Eriksson, J and Lehtimäki, T and Huhtaniemi, IT and Hammond, GL and Maggio, M and Coviello, AD and Emas Study Group, and Ferrucci, L and Heier, M and Hofman, A and Holliday, KL and Jansson, JO and Kähönen, M and Karasik, D and Karlsson, MK and Kiel, DP and Liu, Y and Ljunggren, O and Lorentzon, M and Lyytikäinen, LP and Meitinger, T and Mellström, D and Melzer, D and Miljkovic, I and Nauck, M and Nilsson, M and Penninx, B and Pye, SR and Vasan, RS and Reincke, M and Rivadeneira, F and Tajar, A and Teumer, A and Uitterlinden, AG and Ulloor, J and Viikari, J and Völker, U and Völzke, H and Wichmann, HE and Wu, TS and Zhuang, WV and Ziv, E and Wu, FCW and Raitakari, O and Eriksson, A and Bidlingmaier, M and Harris, TB and Murray, A and de Jong, FH and Murabito, JM and Bhasin, S and Vandenput, L and Haring, R (2011) Genetic determinants of serum testosterone concentrations in men. PLoS Genetics, 7 (10). ISSN 1553-7390

N'Diaye, A and Chen, GK and Palmer, CD and Ge, B and Tayo, B and Mathias, RA and Ding, J and Nalls, MA and Adeyemo, A and Adoue, V and Ambrosone, CB and Atwood, L and Bandera, EV and Becker, LC and Berndt, SI and Bernstein, L and Blot, WJ and Boerwinkle, E and Britton, A and Casey, G and Chanock, SJ and Demerath, E and Deming, SL and Diver, WR and Fox, C and Harris, TB and Hernandez, DG and Hu, JJ and Ingles, SA and John, EM and Johnson, C and Keating, B and Kittles, RA and Kolonel, LN and Kritchevsky, SB and Marchand, L and Lohman, K and Liu, J and Millikan, RC and Murphy, A and Musani, S and Neslund-Dudas, C and North, KE and Nyante, S and Ogunniyi, A and Ostrander, EA and Papanicolaou, G and Patel, S and Pettaway, CA and Press, MF and Redline, S and Rodriguez-Gil, JL and Rotimi, C and Rybicki, BA and Salako, B and Schreiner, PJ and Signorello, LB and Singleton, AB and Stanford, JL and Stram, AH and Stram, DO and Strom, SS and Suktitipat, B and Thun, MJ and Witte, JS and Yanek, LR and Ziegler, RG and Zheng, W and Zhu, X and Zmuda, JM and Zonderman, AB and Evans, MK and Liu, Y and Becker, DM and Cooper, RS and Pastinen, T and Henderson, BE and Hirschhorn, JN and Lettre, G and Haiman, CA (2011) Identification, replication, and fine-mapping of loci associated with adult height in individuals of African ancestry. PLoS Genetics, 7 (10). ISSN 1553-7390

Shen, C and Craigo, J and Ding, M and Chen, Y and Gupta, P (2011) Origin and dynamics of HIV-1 subtype c infection in India. PLoS ONE, 6 (10).

Ayadi, AE and Zigmond, MJ (2011) Low concentrations of methamphetamine can protect dopaminergic cells against a larger oxidative stress injury: Mechanistic study. PLoS ONE, 6 (10).

Sáenz Robles, MT and Case, A and Chong, JL and Leone, G and Pipas, JM (2011) The retinoblastoma tumor suppressor regulates a xenobiotic detoxification pathway. PLoS ONE, 6 (10).

Ong, YC and Boyle, JP and Boothroyd, JC (2011) Strain-dependent host transcriptional responses to toxoplasma infection are largely conserved in mammalian and avian hosts. PLoS ONE, 6 (10).

Francis, R and Xu, X and Park, H and Wei, CJ and Chang, S and Chatterjee, B and Lo, C (2011) Connexin43 modulates cell polarity and directional cell migration by regulating microtubule dynamics. PLoS ONE, 6 (10).

Lund, O and Nascimento, EJM and Maciel, M and Nielsen, M and Larsen, M and Lundegaard, C and Harndahl, M and Lamberth, K and Buus, S and Salmon, J and August, TJ and Marques, ETA (2011) Human leukocyte antigen (HLA) class i restricted epitope discovery in yellow fewer and dengue viruses: Importance of HLA binding strength. PLoS ONE, 6 (10).

Schwartz, JL and Rountree, W and Kashuba, ADM and Brache, V and Creinin, MD and Poindexter, A and Kearney, BP (2011) A multi-compartment, single and multiple dose pharmacokinetic study of the vaginal candidate microbicide 1% tenofovir gel. PLoS ONE, 6 (10).

Vallejo, AN and Hamel, DL and Mueller, RG and Ives, DG and Michel, JJ and Boudreau, RM and Newman, AB (2011) Nk-like T cells and plasma cytokines, but Not Anti-Viral serology, define immune fingerprints of resilience and mild disability in exceptional aging. PLoS ONE, 6 (10).

Mishima, T and Miner, JH and Morizane, M and Stahl, A and Sadovsky, Y (2011) The expression and function of fatty acid transport protein-2 and -4 in the murine placenta. PLoS ONE, 6 (10).

Kim, SH and Sehrawat, A and Sakao, K and Hahm, ER and Singh, SV (2011) Notch activation by phenethyl isothiocyanate attenuates its inhibitory effect on prostate cancer cell migration. PLoS ONE, 6 (10).

Hayut, I and Fanselow, EE and Connors, BW and Golomb, D (2011) LTS and FS inhibitory interneurons, short-term synaptic plasticity, and cortical circuit dynamics. PLoS Computational Biology, 7 (10). ISSN 1553-734X

Pope, WH and Ferreira, CM and Jacobs-Sera, D and Benjamin, RC and Davis, AJ and DeJong, RJ and Elgin, SCR and Guilfoile, FR and Forsyth, MH and Harris, AD and Harvey, SE and Hughes, LE and Hynes, PM and Jackson, AS and Jalal, MD and MacMurray, EA and Manley, CM and McDonough, MJ and Mosier, JL and Osterbann, LJ and Rabinowitz, HS and Rhyan, CN and Russell, DA and Saha, MS and Shaffer, CD and Simon, SE and Sims, EF and Tovar, IG and Weisser, EG and Wertz, JT and Weston-Hafer, KA and Williamson, KE and Zhang, B and Cresawn, SG and Jain, P and Piuri, M and Jacobs, WR and Hendrix, RW and Hatfull, GF (2011) Cluster k mycobacteriophages: Insights into the evolutionary origins of mycobacteriophage tm4. PLoS ONE, 6 (10).

Vazquez, A and Markert, EK and Oltvai, ZN (2011) Serine biosynthesis with one carbon catabolism and the glycine cleavage system represents a novel pathway for ATP generation. PLoS ONE, 6 (11).

Stamm, JA and Belloli, EA and Zhang, Y and Bon, J and Sciurba, FC and Gladwin, MT (2011) Elevated n-terminal pro-brain natriuretic peptide is associated with mortality in tobacco smokers independent of airflow obstruction. PLoS ONE, 6 (11).

Bavagnoli, L and Dundon, WG and Garbelli, A and Zecchin, B and Milani, A and Parakkal, G and Baldanti, F and Paolucci, S and Volmer, R and Tu, Y and Wu, C and Capua, I and Maga, G (2011) The PDZ-ligand and Src-homology type 3 domains of epidemic avian influenza virus NS1 protein modulate human Src kinase activity during viral infection. PLoS ONE, 6 (11).

Wang, PG and Gong, J and Wang, SQ and Talbott, EO and Zhang, B and He, QQ (2011) Relationship of body fat and cardiorespiratory fitness with cardiovascular risk in Chinese children. PLoS ONE, 6 (11).

Kilpatrick, ZP and Ermentrout, B (2011) Sparse gamma rhythms arising through clustering in adapting neuronal networks. PLoS Computational Biology, 7 (11). ISSN 1553-734X

Ko, SH and Nauta, A and Morrison, SD and Zhou, H and Zimmermann, A and Gurtner, GC and Ding, S and Longaker, MT (2011) Antimycotic ciclopirox olamine in the diabetic environment promotes angiogenesis and enhances wound healing. PLoS ONE, 6 (11).

Li, X and LeBlanc, J and Truong, A and Vuthoori, R and Chen, SS and Lustgarten, JL and Roth, B and Allard, J and Ippoliti, A and Presley, LL and Borneman, J and Bigbee, WL and Gopalakrishnan, V and Graeber, TG and Elashoff, D and Braun, J and Goodglick, L (2011) A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface. PLoS ONE, 6 (11).

Pelak, K and Need, AC and Fellay, J and Shianna, KV and Feng, S and Urban, TJ and Ge, D and de Luca, A and Martinez-Picado, J and Wolinsky, SM and Martinson, JJ and Jamieson, BD and Bream, JH and Martin, MP and Borrow, P and Letvin, NL and McMichael, AJ and Haynes, BF and Telenti, A and Carrington, M and Goldstein, DB and Alter, G (2011) Copy number variation of KIR genes influences HIV-1 control. PLoS Biology, 9 (11). ISSN 1544-9173

Li, J and Sayeed, S and Robertson, S and Chen, J and McClane, BA (2011) Sialidases affect the host cell adherence and epsilon toxin-induced cytotoxicity of Clostridium perfringens type D strain CN3718. PLoS Pathogens, 7 (12). ISSN 1553-7366

Gagliani, N and Gregori, S and Jofra, T and Valle, A and Stabilini, A and Rothstein, DM and Atkinson, M and Roncarolo, MG and Battaglia, M (2011) Rapamycin combined with anti-CD45RB mAB and IL-10 or with G-CSF induces tolerance in a stringent mouse model of islet transplantation. PLoS ONE, 6 (12).

Choi, YJ and Ghedin, E and Berriman, M and McQuillan, J and Holroyd, N and Mayhew, GF and Christensen, BM and Michalski, ML (2011) A deep sequencing approach to comparatively analyze the transcriptome of lifecycle stages of the filarial worm, brugia malayi. PLoS Neglected Tropical Diseases, 5 (12). ISSN 1935-2727

Bauer, EM and Zheng, H and Comhair, S and Erzurum, S and Billiar, TR and Bauer, PM (2011) Complement C3 deficiency attenuates chronic hypoxia-induced pulmonary hypertension in mice. PLoS ONE, 6 (12).

Vella, JB and Thompson, SD and Bucsek, MJ and Song, M and Huard, J (2011) Murine and human myogenic cells identified by elevated aldehyde dehydrogenase activity: Implications for muscle regeneration and repair. PLoS ONE, 6 (12).

Wang, T and Molliver, DC and Jing, X and Schwartz, ES and Yang, FC and Samad, OA and Ma, Q and Davis, BM (2011) Phenotypic switching of nonpeptidergic cutaneous sensory neurons following peripheral nerve injury. PLoS ONE, 6 (12).

Litwin-Kumar, A and Oswald, AMM and Urban, NN and Doiron, B (2011) Balanced synaptic input shapes the correlation between neural spike trains. PLoS Computational Biology, 7 (12). ISSN 1553-734X

Lee, BY and Song, Y and Bartsch, SM and Kim, DS and Singh, A and Avery, TR and Brown, ST and Yilmaz, SL and Wong, KF and Potter, MA and Burke, DS and Platt, R and Huang, SS (2011) Long-Term care facilities: Important participants of the acute care facility social network? PLoS ONE, 6 (12).

Zhao, Y and Mangalmurti, NS and Xiong, Z and Prakash, B and Guo, F and Stolz, DB and Lee, JS (2011) Duffy antigen receptor for chemokines mediates chemokine endocytosis through a macropinocytosis-like process in endothelial cells. PLoS ONE, 6 (12).

Kadri, S and Hinman, VF and Benos, PV (2011) RNA deep sequencing reveals differential MicroRNA expression during development of sea urchin and sea star. PLoS ONE, 6 (12).

Yue, T and Maupin, KA and Fallon, B and Li, L and Partyka, K and Anderson, MA and Brenner, DE and Kaul, K and Zeh, H and Moser, AJ and Simeone, DM and Feng, Z and Brand, RE and Haab, BB (2011) Enhanced discrimination of malignant from benign pancreatic disease by measuring the CA 19-9 antigen on specific protein carriers. PLoS ONE, 6 (12).

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